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| Status |
Public on Oct 07, 2011 |
| Title |
Genome-wide location analysis of WNT (Tcf7l2) and BMP (SMAD1) in human hematopoeitic cell lines co-occupied with lineage specific regulators (GATA1, GATA2, CEBPA) |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration. This represents the human ChIP-seq portion of this dataset on leukemia cell lines.
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| Overall design |
Human hematopoietic cells were cross-linked with formaldehyde for 20 min. DNA was enriched by chromatin immunoprecipitation (ChIP) and analyzed by Solexa sequencing. A sample of whole cell extract (WCE) was sequenced and used as the background to determine enrichment. ChIP was performed using an antibody against total Smad1 (Santa Cruz SC-7965), Tcf7l2 (Santa Cruz SC-8631),Gata1 (Santa Cruz SC-265), Gata2 (Santa Cruz SC-9008), CEBPA (SC-9314) or H3K4me1 (Abcam ab8895).
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| Contributor(s) |
Trompouki E, Bowman TV, Lawton LN, Fan ZP, Wu D, DiBiase A, Martin CS, Cech JN, Sessa AK, Leblanc JL, Li P, Durand EM, Mosimann C, Heffner GC, Daley GQ, Paulson RF, Young RA, Zon LI |
| Citation(s) |
22036566 |
| Submission date |
May 10, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Teresa Venezia Bowman |
| Organization name |
Children's Hospital Boston
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| Lab |
Zon Laboratory
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| Street address |
One Blackfan Circle, 7th floor
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (2) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (29)
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| This SubSeries is part of SuperSeries: |
| GSE29196 |
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration |
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| Relations |
| SRA |
SRP008215 |
| BioProject |
PRJNA142955 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29195_CEPBA_U937bio_HG18_min0.5.WIG.gz |
4.3 Mb |
(ftp)(http) |
WIG |
| GSE29195_CEPBA_U937dmso_HG18_min0.5.WIG.gz |
5.5 Mb |
(ftp)(http) |
WIG |
| GSE29195_GATA1_K562bio_HG18_min0.5.WIG.gz |
2.3 Mb |
(ftp)(http) |
WIG |
| GSE29195_GATA1_K562bmp4_HG18_min0.5.WIG.gz |
3.9 Mb |
(ftp)(http) |
WIG |
| GSE29195_GATA2_K562bio_HG18_min0.5.WIG.gz |
6.7 Mb |
(ftp)(http) |
WIG |
| GSE29195_GATA2_K562bmp4_HG18_min0.5.WIG.gz |
4.8 Mb |
(ftp)(http) |
WIG |
| GSE29195_RAW.tar |
1.1 Gb |
(http)(custom) |
TAR (of WIG, YLF) |
| GSE29195_SMAD1_K562bmp4_HG18_min0.5.WIG.gz |
5.6 Mb |
(ftp)(http) |
WIG |
| GSE29195_SMAD1_K562campk_HG18_min0.5.WIG.gz |
2.7 Mb |
(ftp)(http) |
WIG |
| GSE29195_SMAD1_U937bmp4_HG18_min0.5.WIG.gz |
4.6 Mb |
(ftp)(http) |
WIG |
| GSE29195_TCF7L2_K562bio_HG18_min0.5.WIG.gz |
4.3 Mb |
(ftp)(http) |
WIG |
| GSE29195_TCF7L2_U937bio_HG18_min0.5.WIG.gz |
5.0 Mb |
(ftp)(http) |
WIG |
SRA Run Selector |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
| Raw data are available in SRA |
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