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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 31, 2010 |
| Title |
NimbleGen HD2 Human whole genome custom array 2.1M [090310_LP_til_HX1] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Nimblegen |
| Manufacture protocol |
See manufacturer's website
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| Description |
Custom made nimblegen array
NimbleGen file 090310_LP_til_HX1.ndf linked below as supplementary file.
Platform table annotations based on NCBI36 build.
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| Submission date |
Jun 17, 2010 |
| Last update date |
Aug 15, 2012 |
| Contact name |
Bas van Steensel |
| E-mail(s) |
b.v.steensel@nki.nl
|
| Phone |
+ 31 20 512 2040
|
| Fax |
+31 20 669 1383
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| URL |
http://www.nki.nl/nkidep/vansteensel
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| Organization name |
Netherlands Cancer Institute
|
| Department |
division of Molecular Biology
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| Lab |
van Steensel group
|
| Street address |
Plesmanlaan 121
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| City |
Amsterdam |
| ZIP/Postal code |
1066 CX |
| Country |
Netherlands |
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| Samples (20)
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GSM557443, GSM557444, GSM984848, GSM990672, GSM990673, GSM990674
GSM990675, GSM1329044, GSM1329045, GSM1329046, GSM1329047, GSM1333658, GSM1333659, GSM1333660, GSM1333661, GSM1612855, GSM1612856, GSM1700333, GSM1700334, GSM2030834
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| Series (12)
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| GSE22428 |
Evolutionary conservation of nuclear lamina-genome interactions |
| GSE40094 |
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation (methylation data) |
| GSE40112 |
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation |
| GSE55066 |
Stochastic genome-nuclear lamina interactions: Modulating roles of Lamin A and BAF |
| GSE55289 |
Domains of genomewide gene expression dysregulation in Down syndrome [array] |
| GSE55426 |
Domains of genomewide gene expression dysregulation in Down syndrome |
| GSE66018 |
TSA-Seq Mapping of Nuclear Genome Organization [array] |
| GSE66019 |
TSA-Seq Mapping of Nuclear Genome Organization |
| GSE69373 |
Genome-wide maps of nuclear lamina interactions (DamID on microarray; LaminB1, KBM7 cells, haploid) |
| GSE69423 |
Genome-wide maps of nuclear lamina interactions in single human cells |
| GSE76605 |
Massive reshaping of genome - nuclear lamina interactions during oncogene induced senescence |
| GSE76646 |
Massive reshaping of genome - nuclear lamina interactions during oncogene induced senescence (genome tiling) |
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| Data table header descriptions |
| ID |
Based on PROBE_ID column in .ndf file |
| CHROMOSOME |
probe chromosome |
| RANGE_GB |
Chromosome ACCESSION.VERSION |
| RANGE_START |
Chromosomal start position of oligo (probe_start) |
| RANGE_END |
Chromosomal end position of oligo (probe_end) |
| SEQUENCE |
probe sequence |
| Data table |
| ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01P000000505_1 |
chr1 |
NC_000001.9 |
505 |
554 |
ACCTGAGGAGAACTGTGCTCCGCCTTCAGAGTACCACCGAAATCTGTGCA |
| CHR01P000003124_1 |
chr1 |
NC_000001.9 |
3124 |
3173 |
GCTCCTGGACCAGTGATACACCCGGCACCCTGTCCTGGACACGCTGTTGG |
| CHR01P000005401_1 |
chr1 |
NC_000001.9 |
5401 |
5450 |
TCCTGTCAGTTTGAGCTGGGTGAGCTTAGAGAGGAAAGCTCCACTATGGC |
| CHR01P000008016_1 |
chr1 |
NC_000001.9 |
8016 |
8065 |
GAGAAGAAAGCTCAAGGTACAGGTGGGCAGCAGGGCAGAGACTGGGCAGC |
| CHR01P000010101_1 |
chr1 |
NC_000001.9 |
10101 |
10154 |
TCAGCAGGATTTTGACGGCTTCTAACAAAATCTTGTAGACAAGATGGAGCTATG |
| CHR01P000010626_1 |
chr1 |
NC_000001.9 |
10626 |
10675 |
CTTCTTTCAATCAGCAGGGACCGTGCACTCTCTTGGAGCCACCACAGAAA |
| CHR01P000013801_1 |
chr1 |
NC_000001.9 |
13801 |
13850 |
CAACCCTCAGACTTTACCATAAATGTCATTTCCTCACGTCTGCCTTCCCT |
| CHR01P000015706_1 |
chr1 |
NC_000001.9 |
15706 |
15755 |
ATGAGTGTGGCATGAAGGGCCTAGGAGATTTCACTTGGGTTTAAAATGCT |
| CHR01P000016501_1 |
chr1 |
NC_000001.9 |
16501 |
16554 |
AAGACACTACACTAGCCAGGGAGAGTCTCAAAAACAACTAAACTCAAATTAAAT |
| CHR01P000017902_1 |
chr1 |
NC_000001.9 |
17902 |
17956 |
GCCCAAACATTTTGTTAGTAGTACCAACTGTAAGTCACCTTATCTTCATACTTTG |
| CHR01P000019924_1 |
chr1 |
NC_000001.9 |
19924 |
19973 |
ATGGAAGGGTGCTGGAAATGAGTGGTAGTGATGGCGGCACAACAGTGTGA |
| CHR01P000020812_1 |
chr1 |
NC_000001.9 |
20812 |
20861 |
TTCTCTCCTCTGTCTTTTCCCACCAAGTGAGGATGCGAAGAGAAGGTGGC |
| CHR01P000021910_1 |
chr1 |
NC_000001.9 |
21910 |
21959 |
TCATTCTCATGTGTGGACACAGAAGCTCTGCCTGCCTTTGCTGGCCAGCT |
| CHR01P000022905_1 |
chr1 |
NC_000001.9 |
22905 |
22969 |
GGCTTGTGTCCATAGATTAATGAGTGAATACACAAATGGTGATATGGACATACAGTGGAGTATTA |
| CHR01P000026314_1 |
chr1 |
NC_000001.9 |
26314 |
26363 |
ATCATCCCGACACAATGAGCCATATGTGAAAAGTCATCCTTCCCCAACAC |
| CHR01P000027415_1 |
chr1 |
NC_000001.9 |
27415 |
27464 |
TGGGATGCACAGAGATAACTCCAACCCTTAAGAAGGTGTTTCCTAGAGCA |
| CHR01P000028225_1 |
chr1 |
NC_000001.9 |
28225 |
28274 |
GAGCAGAAAGCTTAGAAAAGTGGTCTCCTGCAGTTACGTGGCAAACACAT |
| CHR01P000030005_1 |
chr1 |
NC_000001.9 |
30005 |
30054 |
TGAGCCCTAGATGAGAACCCAGTGCTGGCTGACACCCTGATGGCACCTTA |
| CHR01P000031916_1 |
chr1 |
NC_000001.9 |
31916 |
31965 |
TCCACTGTAGAGAGGGTAAACAATGTGCCATTACGTTGCCAATTGAATGC |
| CHR01P000032516_1 |
chr1 |
NC_000001.9 |
32516 |
32572 |
CTAGAAACTAATCAATTAGCAATCAGGAAGGAGTTGTGGTAGGAAGTCTGTGCTGTT |
Total number of rows: 2151683
Table truncated, full table size 230429 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL10559_090310_LP_til_HX1.ndf.gz |
98.6 Mb |
(ftp)(http) |
NDF |
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