NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL11289 Query DataSets for GPL11289
Status Public on Feb 01, 2011
Title Nimblegen Homo sapiens HG18 Expression Array 4x72k (All Probes)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Catalog number A4487001-00-01
 
Description This is a whole genome human expression array in 4-plex format provided by Nimblegen. See manufacturer's website at http://www.nimblegen.com/.

Format: 4x72K
Source: NCBI
Build: HG18
Probe Length: 60mer
Design Name: HG18 60mer expr 4plex
Genes: 24,000
Probes/ Target: 3
Replicates: 1
 
Submission date Dec 07, 2010
Last update date Sep 27, 2011
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (4) GSM635701, GSM635702, GSM635703, GSM635704
Series (2)
GSE25894 Analysis of mRNA levels of GPCR and GPCR-related signaling proteins in the HEK293 cell line
GSE25901 Expression of G protein-coupled receptors and related proteins in HEK293, AtT20, BV2, and N18 cell lines as revealed by microarray analysis
Relations
Alternative to GPL8971

Data table header descriptions
ID PROBE_ID
GB_ACC RefSeq accession
DESIGN_ID Nimblegen design reference
PROBE_DESIGN_ID NG design reference with position ID
SEQ_ID Custom sequence ID
SEQUENCE Nucleotide sequence

Data table
ID GB_ACC DESIGN_ID PROBE_DESIGN_ID SEQ_ID SEQUENCE
NM_000899P04125 NM_000899 5010 5010_0135_0003 NM_000899 ATATGGTAAACTCAGAGATCACTCCTTAGGGGTGAGTCCTATTGCAATATGACCGACAAA
XM_928102P00069 XM_928102 5010 5010_0137_0003 XM_928102 CCCGGGGCTGGAGTCAAGCTGTCTCGCCAGCCTCAAAGGCATGGGGCGGCTGGTTCTGCT
NM_033329P01054 NM_033329 5010 5010_0139_0003 NM_033329 TGCAAAACGAGTACACAGGCAAAATGAGGCCTATATCAGGAGTGACGCTAGGGGCATTCG
NM_144670P04325 NM_144670 5010 5010_0141_0003 NM_144670 ACCATCAAGGTCTATGACTACTACCTACCAGATGAACAGGCAACAATTCAGTATTCTGAT
NM_145267P00193 NM_145267 5010 5010_0143_0003 NM_145267 TTGATGCACCAGAGGATTCCCATTTAGAGAAAGAACCACTGGAAAAATTTCCAGATGATG
XM_372838P00205 XM_372838 5010 5010_0145_0003 XM_372838 GGGGAGGCGCTGATCAAAATCGACTCAGGGCAACCGCACTGGCACCTCCTCCTGGCAGAC
NM_153813P02067 NM_153813 5010 5010_0147_0003 NM_153813 TCACCTTCAGCAACGTCAACAACTACTACGTGCACAAGCGCCTCTACTGTTCAGGCCGCC
NM_033133P04960 NM_033133 5010 5010_0149_0003 NM_033133 CTGCCCCATCCCGTGCAAAACATGCTACCTGATCCCACTCCTAGGACATGTTCCCTTCTC
NM_004224P01821 NM_004224 5010 5010_0151_0003 NM_004224 TGACCCTACTGTAGTCACTACCAGTACCAATGATTACCATGATGTCGTGGTTGTTGATGT
XM_926672P01663 XM_926672 5010 5010_0153_0003 XM_926672 CAGCACTGACTAATACACCCTTAGGTAAGATTAGAGCAAGAATTTCCAATATCTGTGTTC
NM_004801P05858 NM_004801 5010 5010_0155_0003 NM_004801 TCCACAGCAATCCATCAGATATGCTGGAAGATCCAAACGTGCATACAGTAGCAAATATTT
NM_144661P00067 NM_144661 5010 5010_0157_0003 NM_144661 CAAGACCTTCATGAGAAACCTGCCAATCACACCAGGCTATAGCGGCTTTGTGCCATTCCT
NM_025222P02331 NM_025222 5010 5010_0159_0003 NM_025222 TCTGAAAGTGCAAGAGGCGTACACCTTTCCCAAATGTAGACTAGAATCTGCAGGATGCCA
NM_144691P02653 NM_144691 5010 5010_0161_0003 NM_144691 ACAGCGACAGCCCTTCTCGAGCAGATGACACGAGCTAGTCCACGTTGACAGCTTAAGACA
NM_001004303P02542 NM_001004303 5010 5010_0163_0003 NM_001004303 TGAGCACTTATTTAATGAGCCATATCCAAAGTTAGAAATCATGCCTTATGGCACCTAGTC
NM_006769P01045 NM_006769 5010 5010_0165_0003 NM_006769 GCTTGCGGACAGTCGATTCCTGCGAGTGAACTCGTCATGAGGGCGCAAGGCAATGTGTAT
NM_020550P02816 NM_020550 5010 5010_0167_0003 NM_020550 TCTTAGGGTGAGATGAAGTGGTTGGCAACAGGCCAATGCTACTTTCAGAGGCGTTTGAAT
NM_006953P00475 NM_006953 5010 5010_0169_0003 NM_006953 TCGGCAGCCACGGAGTACAGGTTCAAGTATGTCCTGGTCAATATGTCCACGGGCTTGGTA
NM_206880P00061 NM_206880 5010 5010_0171_0003 NM_206880 CACAGTACTGCTGACCTTGTCCTCTTCTCCGTGGTTATGGCGGTCTTCACAGTGGCCCTC
NM_006169P00296 NM_006169 5010 5010_0173_0003 NM_006169 TTTCTTGGGAGATTCATGGCAAGAACGAGAAGAATGATGGTGCTTGTTAGGGGATGTCCT

Total number of rows: 71998

Table truncated, full table size 8298 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL11289_60mer_expr.ndf.gz 4.4 Mb (ftp)(http) NDF
GPL11289_60mer_expr.ngd.gz 1.5 Mb (ftp)(http) NGD
GPL11289_60mer_expr_X4.ncd.gz 234 b (ftp)(http) NCD

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap