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Platform GPL14865 Query DataSets for GPL14865
Status Public on May 08, 2012
Title [mjay_r2] Custom Affymetrix Mouse Exon Junction Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see website
 
Description The MJAY_r2 platform contains the same probesets in the GPL13185 platform, yet the IDs (provided by Affymetrix in the library files) are not identical to those in GPL13185.

The 'alternative/constitutive' information is provided for every exon/probeset which is important for the analysis of the microarray data associated with this platform.

MJAY_r2.pgf : Probe Group File
MJAY_r2.full.mps.txt : Meta Probeset File that Enables transcript level analysis
mjay.r2.annotation_map.txt : contains information that links each probeset and transcript level identifiers to specific annotation information
 
Submission date Nov 09, 2011
Last update date Jan 17, 2013
Contact name Botond Banfi
E-mail(s) botond-banfi@uiowa.edu
Phone 1-319-335-4228
Organization name University of Iowa
Department Anatomy and Cell Biology
Lab Banfi Lab
Street address 2501 Crosspark Road
City Coralville
State/province Iowa
ZIP/Postal code 52241
Country USA
 
Samples (42) GSM830433, GSM830434, GSM830435, GSM830436, GSM830437, GSM830438 
Series (7)
GSE33589 A mutation in the Srrm4 gene causes pre-mRNA splicing defects and deafness in Bronx waltzer mice.
GSE33590 MJAY analysis of vestibular macula RNA obtained from Bronx waltzer and control mice.
GSE33591 A mutation in the Srrm4 gene causes alternative splicing defects and deafness in Bronx waltzer mice.
Relations
Alternative to GPL13185 (Alternative PGF [official])

Data table header descriptions
ID
region_id
Probeset_Target_Sequence
Transcript_Cluster
Chromosome
Genomic_Position
Strand
Gene_Symbols
Gene_Description
Gene_IDs
Constitutive_Exon_vs_Alternative_Exon
SPOT_ID

Data table
ID region_id Probeset_Target_Sequence Transcript_Cluster Chromosome Genomic_Position Strand Gene_Symbols Gene_Description Gene_IDs Constitutive_Exon_vs_Alternative_Exon SPOT_ID
246 JUC0100000001 acacccccatctcagagatgggctttgctggaattgctgttggtgcagcc|gctgggttgcggcccatctgtgaatttatgaccttcaatttctctatgca TC0100003 chr1 4766723_4767791 + ENSMUSG00000050025 constitutive TC0100003
247 JUC0100000003 gcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc|ccctgtgatgccagtcacattaaatatgaatatggctatgccttcttg TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
248 JUC0100000010 gtgtcactgcactcagttgctggcttccacttcgggcttcgttttcacag|gggccgatcaacagtgctaatcgagatatttccgttctccagtgccatgg TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
249 JUC0100000025 gttattttccttcacggattgggagatacagg|gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaat TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
250 JUC0100000033 tgaagaatggcattccttctaacaggattattttgggaggattttctcag|gggccgatcaacagtgctaatcgagatatttccgttctccagtgccatgg TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 constitutive TC0100004
251 JUC0100000037 gcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc|gtttgatatcgttggactttcaccagattcccaggaagatgaatctggaa TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
252 JUC0100000041 acagagtgagttccaggacagccagggctacacagagaaaccctgtctcg|aacatcaacaaaacaaaaacaaaaaaaaaaca TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
253 JUC0100000051 tgaagaatggcattccttctaacaggattattttgggaggattttctcag|ggaggcgccttgtctttatacactgctctcaccacacagcagaaactggc TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
254 JUC0100000054 accagattcccaggaagatgaatctggaattaaacaggcagcagaaaccg|taaaagccttgatagatcaagaagtgaagaatggcattccttctaacagg TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
255 JUC0100000055 ccgctccgatgcccgccgttgtgccggccgcccggaaggccaccgccgcg|gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaat TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
256 JUC0100000057 ccgctccgatgcccgccgttgtgccggccgcccggaaggccaccgccgcg|gttattttccttcacggattgggagatacagg TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
257 JUC0100000058 ccctgtgatgccagtcacattaaatatgaatatggctatgccttcttg|gtttgatatcgttggactttcaccagattcccaggaagatgaatctggaa TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
258 JUC0100000068 atgtaaccttcaaaatctatgaaggcatgatgcacagctcatgtcagcag|gaaatgatggatgtcaagcacttcattgataagctcctacctccaattga TC0100004 chr1 4803454_4914291 + Lypla1 Lysophospholipase 1|Lysophospholipase 1 (Lypla1) 31543132,ENSMUSG00000025903 alternative TC0100004
259 JUC0100000070 tgtgcgattaaaatgtagggagatgcttgctgcagctcttcggacaggag|atgattatgttgcaattggagctgatgaagaagaactgggatctcagatt TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
260 JUC0100000074 tggttcgcattgccaagaagatggacaaaatggtgcagaaaaagaatgcg|gctggcgcattggatttgctgaaagagcttaagaatattcccatgaccct TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
261 JUC0100000084 acttgttcacttgtggcaaatgtaaaaagaagaactgcacttatacacag|gtgcaaactcgtagtgctgatgaaccaatgacaacatttgttgtatgtaa TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
262 JUC0100000101 gatatcctttgtgtgcacatccatatct|acatgaaatacaaaaacagagtacgaagtaggatatcaaatcttaaagat TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
263 JUC0100000103 tctcagattgaggaag|ctatatatcaagaaataaggaatacaga TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
264 JUC0100000108 aaagagcctgcaatttcatcacagaatagccctgaagcaagagaagaaag|ttccagcagcaatgtaagcagcagaaaggatgagacaaatgctcgagata TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005
265 JUC0100000109 tgctgtgtgggaatattcctcctgatctatttgctagaatgacagcagag|gaaatggctagtgatgagctcaaagagatgaggaaaaacctgaccaaaga TC0100005 chr1 4853395_4893494 + MGC103154,S-II,Tcea1 Ion elongation factor A (SII) 1 (Tcea1) 40254396,ENSMUSG00000033813 alternative TC0100005

Total number of rows: 532378

Table truncated, full table size 191377 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14865_MJAY_r2.full.mps.txt.gz 1.4 Mb (ftp)(http) TXT
GPL14865_MJAY_r2.pgf.gz 68.3 Mb (ftp)(http) PGF
GPL14865_mjay.r2.annotation_map.txt.gz 63.6 Mb (ftp)(http) TXT

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