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Platform GPL16605 Query DataSets for GPL16605
Status Public on Feb 09, 2013
Title NimbleGen_MM9_3x720K_Refseq_Promoter [090618_MM9_Refseq_Prom_ChIP]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen
Manufacture protocol http://www.nimblegen.com
 
 
Submission date Feb 07, 2013
Last update date Feb 09, 2013
Contact name James P Reddington
Organization name EMBL
Street address Meyerhofstrasse 1
City Heidelberg
ZIP/Postal code 69115 Heidelberg
Country Germany
 
Samples (15) GSM1079704, GSM1079705, GSM1079706, GSM1079707, GSM1079708, GSM1079709 
Series (3)
GSE44149 Chip-chip for H3K27me3 and H3K4me3 in DNA methylation deficient mouse embryonic fibroblasts
GSE44278 Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of polycomb-target genes
GSE113895 Cardiac-specific developmental and epigenetic functions of Jarid2 during embryonic development

Data table header descriptions
ID PROBE_ID from Nimblegen
SEQ_ID genomic coordinates of the tiled region that this probe belongs to
CHROMOSOME chromosome
RANGE_GB GenBank Accession number
SPOT_ID
RANGE_START genomic coordinate for the start of this probe
LENGTH length of this probe in bp
GC GC content
GENE_SYMBOL refseq genes (gene symbol) that have a transcription start site within the seq id (tiled region)
REFSEQ_ID refseq genes (refseq id that have a transcription start site within the seq id (tiled region)
SEQUENCE
RANGE_END

Data table
ID SEQ_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START LENGTH GC GENE_SYMBOL REFSEQ_ID SEQUENCE RANGE_END
CHR01FS003660793 chr1:3660779-3664779 chr1 NC_000067.5 3660793 50 0.68 Xkr4 NM_001011874 CTTGCCTCTGCGGCGTGGAAGGACGAACCTCGCCTTCCCCGGCTGCAGAC 3660842
CHR01FS003660903 chr1:3660779-3664779 chr1 NC_000067.5 3660903 50 0.54 Xkr4 NM_001011874 GTGGAGCTGTCCTCGGTGCTGAAATCATGCACAAACCAGCGGAAGCTGAA 3660952
CHR01FS003661003 chr1:3660779-3664779 chr1 NC_000067.5 3661003 50 0.66 Xkr4 NM_001011874 ACCACCAGCGCTGGCCACGCAGGTAGTAGTCCACCGCGAGCCAGATGTCC 3661052
CHR01FS003661098 chr1:3660779-3664779 chr1 NC_000067.5 3661098 50 0.7 Xkr4 NM_001011874 AGGCAGTCCCACAGCGAGTAACGCCGCTGCTCCCTGCCCAGGCGCAGGCA 3661147
CHR01FS003661188 chr1:3660779-3664779 chr1 NC_000067.5 3661188 50 0.84 Xkr4 NM_001011874 CCCGAGCCGCCCGAGCCCGCCGAGCCGCCGCTCCCCGCGCAGCAGCAGCA 3661237
CHR01FS003661303 chr1:3660779-3664779 chr1 NC_000067.5 3661303 50 0.66 Xkr4 NM_001011874 CGGACCCCGACGGCAAGCCTGGAGCCAGTCCTTGCACAGAGCCCGAATTG 3661352
CHR01FS003661398 chr1:3660779-3664779 chr1 NC_000067.5 3661398 50 0.62 Xkr4 NM_001011874 ATCTTCAGCCTCCCGTCTGACTTAGCGGCCATGATGCCTCGGCAGCGGAG 3661447
CHR01FS003661483 chr1:3660779-3664779 chr1 NC_000067.5 3661483 50 0.74 Xkr4 NM_001011874 TCTCCTCCTCCCGCCACCTCCTCGCCTCGCCCTGGCTTCCTTCCCCGGCC 3661532
CHR01FS003661593 chr1:3660779-3664779 chr1 NC_000067.5 3661593 50 0.82 Xkr4 NM_001011874 CGCTGGGCCCGGCTAGCCGCACGCTCGGGACCCGCAGGAGCGCCGCCTGG 3661642
CHR01FS003661688 chr1:3660779-3664779 chr1 NC_000067.5 3661688 50 0.86 Xkr4 NM_001011874 CTGACAGCCGCCCGCGCTCCGCGCCGGCCCGGCCCCGCGGCTGCAGCACG 3661737
CHR01FS003661783 chr1:3660779-3664779 chr1 NC_000067.5 3661783 50 0.7 Xkr4 NM_001011874 AGCTCCTCGGACCTGCACATTCCTCTCCTCCCCTCGCGCGCGCTCCCTCC 3661832
CHR01FS003661888 chr1:3660779-3664779 chr1 NC_000067.5 3661888 50 0.76 Xkr4 NM_001011874 TCCCTTCCAGCTGCCGCCGCTCCCACCCCGGCTGGGGAGGGGCGAGAAGG 3661937
CHR01FS003661993 chr1:3660779-3664779 chr1 NC_000067.5 3661993 50 0.7 Xkr4 NM_001011874 GGCCAGTGCTGGACGCGGAGGGCAACAGCACGGCAATCGGAGGCCCAGTC 3662042
CHR01FS003662098 chr1:3660779-3664779 chr1 NC_000067.5 3662098 50 0.66 Xkr4 NM_001011874 GGGATGGGCAGAGCGCGCCGCGTGTTAGAGCCTTGGTGTTGGGTCACTGC 3662147
CHR01FS003662183 chr1:3660779-3664779 chr1 NC_000067.5 3662183 50 0.56 Xkr4 NM_001011874 CAGCAGCGAAGGCTGCGGAAGAAATGGTCTCTTTGTATTGTACCGGGCGC 3662232
CHR01FS003662283 chr1:3660779-3664779 chr1 NC_000067.5 3662283 50 0.56 Xkr4 NM_001011874 GGTGAACACGCTTTAACTAGGAAGCTAGGGCTCCTATACTGGCGGCGGTG 3662332
CHR01FS003662383 chr1:3660779-3664779 chr1 NC_000067.5 3662383 50 0.56 Xkr4 NM_001011874 TAGAACACCTAAAGCAAAGCTGGCAGCAGAGGGCGAGCCCTCGGGATAAG 3662432
CHR01FS003662493 chr1:3660779-3664779 chr1 NC_000067.5 3662493 50 0.58 Xkr4 NM_001011874 CTATCTCAGGAGGTGGGTGCATGAAGCCCTGTCCCCCTGCGAGTTTAACG 3662542
CHR01FS003662583 chr1:3660779-3664779 chr1 NC_000067.5 3662583 50 0.62 Xkr4 NM_001011874 TACTCCTAACCGCAGGTGGGAAACGCTGCACCTCTGGCGGCGGCAACCTA 3662632
CHR01FS003662703 chr1:3660779-3664779 chr1 NC_000067.5 3662703 50 0.5 Xkr4 NM_001011874 GCGCAGGGAGTGGCAGATCCCAAAGCTAATGCCACTTCTCTTATTCCAAA 3662752

Total number of rows: 714900

Table truncated, full table size 114581 Kbytes.




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Supplementary file Size Download File type/resource
GPL16605_090618_MM9_Refseq_Prom_ChIP.ndf.gz 46.8 Mb (ftp)(http) NDF
GPL16605_090618_MM9_Refseq_Prom_ChIP.pos.gz 6.1 Mb (ftp)(http) POS

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