 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 28, 2013 |
| Title |
Agilent-020382 Human Custom Microarray 44k (Feature Number version) |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
|
| |
|
| Description |
NB-CustomArray_4x44k
|
| |
|
| Submission date |
Mar 26, 2013 |
| Last update date |
Mar 28, 2013 |
| Contact name |
Thomas Wolf |
| E-mail(s) |
t.wolf@dkfz.de
|
| Organization name |
DKFZ
|
| Street address |
Im Neuenheimer Feld 580
|
| City |
Heidelberg |
| ZIP/Postal code |
D-69120 |
| Country |
Germany |
| |
|
| Samples (1743)
|
GSM1108371, GSM1108372, GSM1108373, GSM1108374, GSM1108375, GSM1108376
GSM1108377, GSM1108378, GSM1108379, GSM1108380, GSM1108381, GSM1108382, GSM1108383, GSM1108384, GSM1108385, GSM1108386, GSM1108387, GSM1108388, GSM1108389, GSM1108390, GSM1108391, GSM1108392, GSM1108393, GSM1108394, GSM1108401, GSM1108402, GSM1108403, GSM1108404, GSM1108405, GSM1108406, GSM1108407, GSM1108408, GSM1108409, GSM1108410, GSM1108411, GSM1108412, GSM1108413, GSM1108414, GSM1108415, GSM1108416, GSM1108417, GSM1108418, GSM1108419, GSM1108420, GSM1108421, GSM1108422, GSM1108423, GSM1108424, GSM1108425, GSM1108426, GSM1108427, GSM1108428, GSM1108429, GSM1108430, GSM1108431, GSM1108432, GSM1108433, GSM1108434, GSM1108435, GSM1108436, GSM1108437, GSM1108438, GSM1108439, GSM1108440, GSM1108441, GSM1108442, GSM1108443, GSM1108444, GSM1108445, GSM1108446, GSM1108447, GSM1108448, GSM1108449, GSM1108450, GSM1108451, GSM1108452, GSM1108453, GSM1108454, GSM1108455, GSM1108456, GSM1108457, GSM1108458, GSM1108459, GSM1108460, GSM1108461, GSM1108462, GSM1108463, GSM1108464, GSM1108465, GSM1108466, GSM1108467, GSM1108468, GSM1108469, GSM1108470, GSM1108471, GSM1108472, GSM1108473, GSM1108474, GSM1108475, GSM1108476, GSM1108477, GSM1108478, GSM1108479, GSM1108480, GSM1108481, GSM1108482, GSM1108483, GSM1108484, GSM1108485, GSM1108486, GSM1108487, GSM1108488, GSM1108489, GSM1108490, GSM1108491, GSM1108492, GSM1108493, GSM1108494, GSM1108495, GSM1108496, GSM1108497, GSM1108498, GSM1108499, GSM1108500, GSM1108501, GSM1108502, GSM1108503, GSM1108504, GSM1108505, GSM1108506, GSM1108507, GSM1108508, GSM1108509, GSM1108510, GSM1108511, GSM1108512, GSM1108513, GSM1108514, GSM1108515, GSM1108516, GSM1108517, GSM1108518, GSM1108519, GSM1108520, GSM1108521, GSM1108522, GSM1108523, GSM1108524, GSM1108525, GSM1108526, GSM1108527, GSM1108528, GSM1108529, GSM1108530, GSM1108531, GSM1108532, GSM1108533, GSM1108534, GSM1108535, GSM1108536, GSM1108537, GSM1108538, GSM1108539, GSM1108540, GSM1108541, GSM1108542, GSM1108543, GSM1108544, GSM1108545, GSM1108546, GSM1108547, GSM1108548, GSM1108549, GSM1108550, GSM1108551, GSM1108552, GSM1108553, GSM1108554, GSM1108555, GSM1108556, GSM1108557, GSM1108558, GSM1108559, GSM1108560, GSM1108561, GSM1108562, GSM1108563, GSM1108564, GSM1108565, GSM1108566, GSM1108567, GSM1108568, GSM1108569, GSM1108570, GSM1108571, GSM1108572, GSM1108573, GSM1108574, GSM1108575, GSM1108576, GSM1108577, GSM1108578, GSM1108579, GSM1108580, GSM1108581, GSM1108582, GSM1108583, GSM1108584, GSM1108585, GSM1108586, GSM1108587, GSM1108588, GSM1108589, GSM1108590, GSM1108591, GSM1108592, GSM1108593, GSM1108594, GSM1108595, GSM1108596, GSM1108597, GSM1108598, GSM1108599, GSM1108600, GSM1108601, GSM1108602, GSM1108603, GSM1108604, GSM1108605, GSM1108606, GSM1108607, GSM1108608, GSM1108609, GSM1108610, GSM1108611, GSM1108612, GSM1108613, GSM1108614, GSM1108615, GSM1108616, GSM1108617, GSM1108618, GSM1108619, GSM1108620, GSM1108621, GSM1108622, GSM1108623, GSM1108624, GSM1108625, GSM1108626, GSM1108627, GSM1108628, GSM1108629, GSM1108630, GSM1108631, GSM1108632, GSM1108633, GSM1108634, GSM1108635, GSM1108636, GSM1108637, GSM1108638, GSM1108639, GSM1108640, GSM1108641, GSM1108642, GSM1108643, GSM1108644, GSM1108645, GSM1108646, GSM1108647, GSM1108648, GSM1108649, GSM1108650, GSM1108651, GSM1108652, GSM1108653, GSM1108654, GSM1108655, GSM1108656, GSM1108657, GSM1108658, GSM1108659, GSM1108660, GSM1108661, GSM1108662, GSM1108663, GSM1108664, GSM1108665, GSM1108666, GSM1108667, GSM1108668, GSM1108669, GSM1108670, GSM1108671, GSM1108672, GSM1108673, GSM1108674, GSM1108675, GSM1108676, GSM1108677, GSM1108678, GSM1108679, GSM1108680, GSM1108681, GSM1108682, GSM1108683, GSM1108684, GSM1108685, GSM1108686, GSM1108687, GSM1108688, GSM1108689, GSM1108690, GSM1108691, GSM1108692, GSM1108693, GSM1108694, GSM1108695, GSM1108696, GSM1108697, GSM1108698, GSM1108699, GSM1108700, GSM1108701, GSM1108702, GSM1108703, GSM1108704, GSM1108705, GSM1108706, GSM1108707, GSM1108708, GSM1108709, GSM1108710, GSM1108711, GSM1108712, GSM1108713, GSM1108714, GSM1108715, GSM1108716, GSM1108717, GSM1108718, GSM1108719, GSM1108720, GSM1108721, GSM1108722, GSM1108723, GSM1108724, GSM1108725, GSM1108726, GSM1108727, GSM1108728, GSM1108729, GSM1108730, GSM1108731, GSM1108732, GSM1108733, GSM1108734, GSM1108735, GSM1108736, GSM1108737, GSM1108738, GSM1108739, GSM1108740, GSM1108741, GSM1108742, GSM1108743, GSM1108744, GSM1108745, GSM1108746, GSM1108747, GSM1108748, GSM1108749, GSM1108750, GSM1108751, GSM1108752, GSM1108753, GSM1108754, GSM1108755, GSM1108756, GSM1108757, GSM1108758, GSM1108759, GSM1108760, GSM1108761, GSM1108762, GSM1108763, GSM1108764, GSM1108765, GSM1108766, GSM1108767, GSM1108768, GSM1108769, GSM1108770, GSM1108771, GSM1108772, GSM1108773, GSM1108774, GSM1108775, GSM1108776, GSM1108777, GSM1108778, GSM1108779, GSM1108780, GSM1108781, GSM1108782, GSM1108783, GSM1108784, GSM1108785, GSM1108786, GSM1108787, GSM1108788, GSM1108789, GSM1108790, GSM1108791, GSM1108792, GSM1108793, GSM1108794, GSM1108795, GSM1108796, GSM1108797, GSM1108798, GSM1108799, GSM1108800, GSM1108801, GSM1108802, GSM1108803, GSM1108804, GSM1108805, GSM1108806, GSM1108807, GSM1108808, GSM1108809, GSM1108810, GSM1108811, GSM1108812, GSM1108813, GSM1108814, GSM1108815, GSM1108816, GSM1108817, GSM1108818, GSM1108819, GSM1108820, GSM1108821, GSM1108822, GSM1108823, GSM1108824, GSM1108825, GSM1108826, GSM1108827, GSM1108828, GSM1108829, GSM1108830, GSM1108831, GSM1108832, GSM1108833, GSM1108834, GSM1108835, GSM1108836, GSM1108837, GSM1108838, GSM1108839, GSM1108840, GSM1108841, GSM1108842, GSM1108843, GSM1108844, GSM1108845, GSM1108846, GSM1108847, GSM1108848, GSM1108849, GSM1108850, GSM1108851, GSM1108852, GSM1108853, GSM1108854, GSM1108855, GSM1108856, GSM1108857, GSM1108858, GSM1108859, GSM1108860, GSM1108861, GSM1108862, GSM1108863, GSM1108864, GSM1108865, GSM1108866, GSM1108867, GSM1108868, GSM1108869, GSM1108870, GSM1108871, GSM1108872, GSM1108873, GSM1108874, GSM1108875, GSM1108876...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
|
| Series (15)
|
| GSE45480 |
Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma |
| GSE45545 |
Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma [cell line_genex_44k] |
| GSE45547 |
Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma [tumor_genex_44k] |
| GSE47792 |
SEQC Project |
| GSE49710 |
RNA-Seq reveals an unprecedented complexity of the neuroblastoma transcriptome and is suitable for clinical endpoint prediction [microarray] |
| GSE62419 |
FOXP1 inhibits cell growth and attenuates tumorigenicity of neuroblastoma |
| GSE65303 |
Comprehensive genomic analysis of relapse neuroblastoma [gene expression] |
| GSE65307 |
Comprehensive genomic analysis of relapse neuroblastoma |
| GSE73517 |
RNA expression data from primary neuroblastoma tumors |
| GSE73518 |
Primary neuroblastoma tumors |
| GSE74350 |
Transcription factor activating protein 2 beta (TFAP2B) mediates noradrenergic neuronal differentiation in neuroblastoma |
| GSE79910 |
An 18 gene expression-based score classifier predicts the clinical outcome in stage 4 neuroblastoma |
| GSE120559 |
A mechanistic classification of clinical phenotypes in neuroblastoma (telomere maintenance cohort) |
| GSE120568 |
A mechanistic classification of clinical phenotypes in neuroblastoma (TERT expression threshold cohort) |
| GSE120572 |
A mechanistic classification of clinical phenotypes in neuroblastoma |
|
| Data table header descriptions |
| ID |
Agilent FeatureNum |
| Row |
|
| Col |
|
| ControlType |
|
| ProbeName |
|
| SystematicName |
|
| Agilent_Probe_Name |
|
| SPOT_ID |
|
| CONTROL_TYPE |
|
| SEQUENCE |
|
| anno_NBcustom4_.Row |
|
| Column |
|
| ControlType |
|
| PrimaryAccession |
|
| RefSeqAccession |
|
| UniGeneID |
|
| EntrezGeneID |
|
| GeneSymbol |
|
| GeneName |
|
| EnsemblID |
|
| GO |
|
| Chr |
|
| ChrLoc |
|
| UniProtID |
|
| GB_ACC |
GenBank Accession number |
| Data table |
| ID |
Row |
Col |
ControlType |
ProbeName |
SystematicName |
Agilent_Probe_Name |
SPOT_ID |
CONTROL_TYPE |
SEQUENCE |
anno_NBcustom4_.Row |
Column |
ControlType |
PrimaryAccession |
RefSeqAccession |
UniGeneID |
EntrezGeneID |
GeneSymbol |
GeneName |
EnsemblID |
GO |
Chr |
ChrLoc |
UniProtID |
GB_ACC |
| 1 |
1 |
1 |
1 |
GE_BrightCorner |
GE_BrightCorner |
GE_BrightCorner |
GE_BrightCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2 |
1 |
2 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
1 |
3 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
1 |
4 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 5 |
1 |
5 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 6 |
1 |
6 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 7 |
1 |
7 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 8 |
1 |
8 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 9 |
1 |
9 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 10 |
1 |
10 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 11 |
1 |
11 |
1 |
DarkCorner |
DarkCorner |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 12 |
1 |
12 |
0 |
UKv4_A_23_P314216 |
UKv4_A_23_P314216 |
UKv4_A_23_P314216 |
UKv4_A_23_P314216 |
FALSE |
AGCAAATGGAAGAACGATACAAAAAATACTTAGAGAAAGCCAAAAGTGTCATCCGTACTT |
1 |
12 |
0 |
NM_032410 |
NM_032410 |
Hs.162852 |
84376 |
HOOK3 |
hook homolog 3 (Drosophila) |
ENST00000307602 |
GO:0005737(cytoplasm)|GO:0005801(cis-Golgi network)|GO:0005856(cytoskeleton)|GO:0005874(microtubule)|GO:0008017(microtubule binding)|GO:0031122(cytoplasmic microtubule organization and biogenesis)|GO:0051645(Golgi localization) |
chr8 |
-42984659 |
|
NM_032410 |
| 13 |
1 |
13 |
0 |
UKv4_A_24_P126851 |
UKv4_A_24_P126851 |
UKv4_A_24_P126851 |
UKv4_A_24_P126851 |
FALSE |
GTTGTGATCTGTGGATCAGTGAAGTTTGGGAACAAACAATGGGACTTCAACCAGAACTTC |
1 |
13 |
0 |
A_24_P126851 |
|
|
|
|
|
|
|
chr13 |
038641913 |
|
|
| 14 |
1 |
14 |
0 |
UKv4_A_32_P77762 |
UKv4_A_32_P77762 |
UKv4_A_32_P77762 |
UKv4_A_32_P77762 |
FALSE |
TGTTGCCATGACAATGGGCTCAGAGGCTGAAAAGAAGACTTCAACCACTGTCAGCAGCAT |
1 |
14 |
0 |
BX091687 |
|
Hs.125543 |
|
|
|
|
|
chr6 |
65500131 |
|
BX091687 |
| 15 |
1 |
15 |
0 |
UKv4_A_23_P71864 |
UKv4_A_23_P71864 |
UKv4_A_23_P71864 |
UKv4_A_23_P71864 |
FALSE |
GGGGAGGTCAGAGGATGTATGTGGCCGGACCAGCTTCCCCACCTTCATTAGGACAAGAAA |
1 |
15 |
0 |
NM_032809 |
NM_032809 |
Hs.632693 |
84895 |
FAM73B |
family with sequence similarity 73, member B |
ENST00000358369 |
|
chr9 |
-130873368 |
|
NM_032809 |
| 16 |
1 |
16 |
0 |
UKv4_A_32_P48198 |
UKv4_A_32_P48198 |
UKv4_A_32_P48198 |
UKv4_A_32_P48198 |
FALSE |
TCATTTCTGTCATAATTAGTGGGATCCATTTCACTATTATTGGATATACAGTTCTGTGCC |
1 |
16 |
0 |
XR_015889 |
XR_015889 |
Hs.552700 |
728888 |
LOC728888 |
hypothetical LOC728888 |
|
|
chr16 |
|
|
XR_015889 |
| 17 |
1 |
17 |
0 |
UKv4_A_24_P920447 |
UKv4_A_24_P920447 |
UKv4_A_24_P920447 |
UKv4_A_24_P920447 |
FALSE |
TGTTACATAGCTGTGCCTCAGAGAAAGGGTCCTGCATTTTCTGGAATGTTCTCTGTGCTT |
1 |
17 |
0 |
ENST00000329809 |
|
Hs.6434 |
|
|
|
ENST00000329809 |
GO:0016020(membrane)|GO:0016021(integral to membrane) |
chr14 |
-95626085 |
|
|
| 18 |
1 |
18 |
0 |
UKv4_A_23_P114808 |
UKv4_A_23_P114808 |
UKv4_A_23_P114808 |
UKv4_A_23_P114808 |
FALSE |
TAACCTATGGGGGGATGGCCAAGCAGCCCGTCGTAGCCTCTGTGAGCCTGCTCATTTTTA |
1 |
18 |
0 |
NM_016011 |
NM_001024732|NM_016011|NP_001019903|NP_057095 |
Hs.183646 |
51102 |
MECR |
mitochondrial trans-2-enoyl-CoA reductase |
ENSG00000116353 |
GO:0055114=oxidation reduction|GO:0006633=fatty acid biosynthetic process|GO:0005739=mitochondrion|GO:0005488=binding|GO:0016491=oxidoreductase activity|GO:0008270=zinc ion binding|GO:0019166=trans-2-enoyl-CoA reductase (NADPH) activity |
chr1 |
-29391971 |
Q9BV79 |
NM_016011 |
| 19 |
1 |
19 |
0 |
UKv4_A_23_P61823 |
UKv4_A_23_P61823 |
UKv4_A_23_P61823 |
UKv4_A_23_P61823 |
FALSE |
TGTTGTCATCACTGAGTCAGCACTCACCTGGCCTGGGGGAATTAAAGGAATTCCCCGTAA |
1 |
19 |
0 |
NM_130781 |
NM_130781 |
Hs.16258 |
53917 |
RAB24 |
RAB24, member RAS oncogene family |
ENST00000303251 |
GO:0000166(nucleotide binding)|GO:0005525(GTP binding)|GO:0005783(endoplasmic reticulum)|GO:0006914(autophagy)|GO:0007264(small GTPase mediated signal transduction)|GO:0015031(protein transport)|GO:0016020(membrane) |
chr5 |
176661364 |
|
NM_130781 |
| 20 |
1 |
20 |
0 |
UKv4_A_24_P334640 |
UKv4_A_24_P334640 |
UKv4_A_24_P334640 |
UKv4_A_24_P334640 |
FALSE |
TATAAAGGAGATGGCTTATTCAACCATAGCCCCTCCAACATATCTACTGGAAATTCTGCT |
1 |
20 |
0 |
NM_133367 |
NM_133367 |
Hs.239388 |
85315 |
PAQR8 |
progestin and adipoQ receptor family member VIII |
ENST00000361841 |
GO:0004872(receptor activity)|GO:0005496(steroid binding)|GO:0008289(lipid binding)|GO:0016020(membrane)|GO:0016021(integral to membrane) |
chr6 |
-52379839 |
|
NM_133367 |
Total number of rows: 44708
Table truncated, full table size 16125 Kbytes.
| Supplementary data files not provided |
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