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Status
Public on Jan 31, 2014
Title
NanoString Prognostic Liver Signature (PLS) panel (186 genes, ver.0)
Technology type
other
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
NanoString
Manufacture protocol
See manufacturer's website
Submission date
Jun 03, 2013
Last update date
May 15, 2020
Contact name
Yujin Hoshida
E-mail(s)
Yujin.Hoshida@UTSouthwestern.edu Organization name
University of Texas Southwestern Medical Center
Street address
5323 Harry Hines Blvd
City
Dallas
State/province
TX
ZIP/Postal code
75390
Country
USA
Samples (405)
GSM1152901 , GSM1152902 , GSM1152903 , GSM1152904 , GSM1152905 , GSM1152906
GSM1152907 ,
GSM1152908 ,
GSM1152909 ,
GSM1152910 ,
GSM1152911 ,
GSM1152912 ,
GSM1152913 ,
GSM1152914 ,
GSM1152915 ,
GSM1152916 ,
GSM1152917 ,
GSM1152918 ,
GSM1152919 ,
GSM1152920 ,
GSM1152921 ,
GSM1152922 ,
GSM1152923 ,
GSM1152924 ,
GSM1307935 ,
GSM1307936 ,
GSM1307937 ,
GSM1307938 ,
GSM1307939 ,
GSM1307940 ,
GSM1307941 ,
GSM1307942 ,
GSM1307943 ,
GSM1307944 ,
GSM1307945 ,
GSM1307946 ,
GSM1307947 ,
GSM1307948 ,
GSM1307949 ,
GSM1307950 ,
GSM1307951 ,
GSM1307952 ,
GSM1307953 ,
GSM1307954 ,
GSM1307955 ,
GSM1307956 ,
GSM1307957 ,
GSM1307958 ,
GSM1307959 ,
GSM1307960 ,
GSM1307961 ,
GSM1307962 ,
GSM1307963 ,
GSM1307964 ,
GSM1307965 ,
GSM1307966 ,
GSM1307967 ,
GSM1307968 ,
GSM1307969 ,
GSM1307970 ,
GSM1307971 ,
GSM1307972 ,
GSM1307973 ,
GSM1307974 ,
GSM1307975 ,
GSM1307976 ,
GSM1307977 ,
GSM1307978 ,
GSM1307979 ,
GSM1307980 ,
GSM1307981 ,
GSM1307982 ,
GSM1307983 ,
GSM1307984 ,
GSM1307985 ,
GSM1307986 ,
GSM1307987 ,
GSM1307988 ,
GSM1307989 ,
GSM1307990 ,
GSM1307991 ,
GSM1307992 ,
GSM1307993 ,
GSM1307994 ,
GSM1307995 ,
GSM1307996 ,
GSM1307997 ,
GSM1307998 ,
GSM1307999 ,
GSM1308000 ,
GSM1308001 ,
GSM1308002 ,
GSM1308003 ,
GSM1308004 ,
GSM1308005 ,
GSM1308006 ,
GSM1308007 ,
GSM1308008 ,
GSM1308009 ,
GSM1308010 ,
GSM1308011 ,
GSM1308012 ,
GSM1308013 ,
GSM1308014 ,
GSM1308015 ,
GSM1308016 ,
GSM1308017 ,
GSM1308018 ,
GSM1308019 ,
GSM1308020 ,
GSM1308021 ,
GSM1308022 ,
GSM1308023 ,
GSM1308024 ,
GSM1308025 ,
GSM1308026 ,
GSM1308027 ,
GSM1308028 ,
GSM1308029 ,
GSM1308030 ,
GSM1308031 ,
GSM1308032 ,
GSM1308033 ,
GSM1308034 ,
GSM1308035 ,
GSM1308036 ,
GSM1308037 ,
GSM1308038 ,
GSM1308039 ,
GSM1308040 ,
GSM1308041 ,
GSM1308042 ,
GSM1308043 ,
GSM1308044 ,
GSM1308045 ,
GSM1308046 ,
GSM1308047 ,
GSM1308048 ,
GSM1308049 ,
GSM1308050 ,
GSM1308051 ,
GSM1308052 ,
GSM1308053 ,
GSM1308054 ,
GSM1308055 ,
GSM1308056 ,
GSM1308057 ,
GSM1308058 ,
GSM1308059 ,
GSM1308060 ,
GSM1308061 ,
GSM1308062 ,
GSM1308063 ,
GSM1308064 ,
GSM1308065 ,
GSM1308066 ,
GSM1308067 ,
GSM1308068 ,
GSM1308069 ,
GSM1308070 ,
GSM1308071 ,
GSM1308072 ,
GSM1308073 ,
GSM1308074 ,
GSM1308075 ,
GSM1308076 ,
GSM1308077 ,
GSM1308078 ,
GSM1308079 ,
GSM1308080 ,
GSM1308081 ,
GSM1308082 ,
GSM1308083 ,
GSM1308084 ,
GSM1308085 ,
GSM1308086 ,
GSM1308087 ,
GSM1308088 ,
GSM1308089 ,
GSM1308090 ,
GSM1308091 ,
GSM1308092 ,
GSM1308093 ,
GSM1308094 ,
GSM1308095 ,
GSM1308096 ,
GSM1308097 ,
GSM1308098 ,
GSM1308099 ,
GSM1308100 ,
GSM1308101 ,
GSM1308102 ,
GSM1308103 ,
GSM1308104 ,
GSM1308105 ,
GSM1308106 ,
GSM1308107 ,
GSM1308108 ,
GSM1308109 ,
GSM1308110 ,
GSM1308111 ,
GSM1308112 ,
GSM1308113 ,
GSM1308114 ,
GSM1308115 ,
GSM1308116 ,
GSM1308117 ,
GSM1308118 ,
GSM1308119 ,
GSM1308120 ,
GSM1308121 ,
GSM1308122 ,
GSM1308123 ,
GSM1308124 ,
GSM1308125 ,
GSM1308126 ,
GSM1308127 ,
GSM1308128 ,
GSM1308129 ,
GSM1308130 ,
GSM1308131 ,
GSM1308132 ,
GSM1308133 ,
GSM1308134 ,
GSM1308135 ,
GSM1308136 ,
GSM1308137 ,
GSM1308138 ,
GSM1308139 ,
GSM1308140 ,
GSM1308141 ,
GSM1308142 ,
GSM1308143 ,
GSM1308144 ,
GSM1308145 ,
GSM1308146 ,
GSM1308147 ,
GSM1308148 ,
GSM1308149 ,
GSM1308150 ,
GSM1308151 ,
GSM1308152 ,
GSM1308153 ,
GSM1308154 ,
GSM1308155 ,
GSM1308156 ,
GSM1308157 ,
GSM1308158 ,
GSM1308159 ,
GSM1308160 ,
GSM1308161 ,
GSM1308162 ,
GSM1308163 ,
GSM1308164 ,
GSM1308165 ,
GSM1308166 ,
GSM1308167 ,
GSM1308168 ,
GSM1308169 ,
GSM1633141 ,
GSM1633142 ,
GSM1633143 ,
GSM1633144 ,
GSM1633145 ,
GSM1633146 ,
GSM1633147 ,
GSM1633148 ,
GSM1633149 ,
GSM1633150 ,
GSM1633151 ,
GSM1633152 ,
GSM1633153 ,
GSM1633154 ,
GSM1633155 ,
GSM1633156 ,
GSM1633157 ,
GSM1633158 ,
GSM1633159 ,
GSM1633160 ,
GSM1633161 ,
GSM1633162 ,
GSM1633163 ,
GSM1633164 ,
GSM1633165 ,
GSM1633166 ,
GSM1633167 ,
GSM1633168 ,
GSM1633169 ,
GSM1633170 ,
GSM1633171 ,
GSM1633172 ,
GSM1633173 ,
GSM1633174 ,
GSM1633175 ,
GSM1633176 ,
GSM1633177 ,
GSM1633178 ,
GSM1633179 ,
GSM1633180 ,
GSM1633181 ,
GSM1633182 ,
GSM1633183 ,
GSM1633184 ,
GSM1633185 ,
GSM1633186 ,
GSM1633187 ,
GSM1633188 ,
GSM1633189 ,
GSM1633190 ,
GSM1633191 ,
GSM1633192 ,
GSM1633193 ,
GSM1633194 ,
GSM1633195 ,
GSM1633196 ,
GSM1633197 ,
GSM1633198 ,
GSM1633199 ,
GSM1633200 ,
GSM1633201 ,
GSM1633202 ,
GSM1633203 ,
GSM1633204 ,
GSM1633205 ,
GSM1633206 ,
GSM1633207 ,
GSM1633208 ,
GSM1633209 ,
GSM1633210 ,
GSM1633211 ,
GSM1633212 ,
GSM1633213 ,
GSM1633214 ,
GSM1633215 ,
GSM1633216 ,
GSM1633217 ,
GSM1633218 ,
GSM1633219 ,
GSM1633220 ,
GSM1633221 ,
GSM1633222 ,
GSM1633223 ,
GSM1633224 ,
GSM5504766 ,
GSM5504767 ,
GSM5504768 ,
GSM5504769 ,
GSM5504770 ,
GSM5504771 ,
GSM5504772 ,
GSM5504773 ,
GSM5504774 ,
GSM5504775 ,
GSM5504776 ,
GSM5504777 ,
GSM5504778 ,
GSM5504779 ,
GSM5504780 ,
GSM5504781 ,
GSM5504782 ,
GSM5504783 ,
GSM5504784 ,
GSM5504785 ,
GSM5504786 ,
GSM5504787 ,
GSM5504788 ,
GSM5504789 ,
GSM5504809 ,
GSM5504810 ,
GSM5504811 ,
GSM5504812 ,
GSM5504813 ,
GSM5504814 ,
GSM5504815 ,
GSM5504816 ,
GSM5504817 ,
GSM5504818 ,
GSM5504819 ,
GSM5504820 ,
GSM5504821 ,
GSM5504822 ,
GSM5504823 ,
GSM5504824 ,
GSM5504825 ,
GSM5504826 ,
GSM5504827 ,
GSM5504828 ,
GSM5504829 ,
GSM5504830 ,
GSM5504831 ,
GSM5504832 ,
GSM5504833 ,
GSM5504834 ,
GSM5504835 ,
GSM5504836 ,
GSM5504837 ,
GSM5504838 ,
GSM5504839 ,
GSM5504840 ,
GSM5504841 ,
GSM5504842 ,
GSM5504843 ,
GSM5504844 ,
GSM5504845 ,
GSM5504846 Series (10)
GSE47594 Gene-expression profiles of archived section of formalin-fixed paraffin-embedded (AS-FFPE) liver tissues from hepatocellular carcinoma patients
GSE47595 Gene-expression profiles of archived section of formalin-fixed paraffin-embedded (AS-FFPE) liver and tumor tissues from hepatocellular carcinoma patients (Illumina and Nanostring)
GSE54099 Expression profiles of 186-gene signature in Italian hepatitis C virus (HCV)-related liver cirrhosis
GSE54100 Expression profiles of 186-gene signature in U.S. hepatitis C virus (HCV)-related liver cirrhosis
GSE54102 A genomic and clinical prognostic index for hepatitis C-related early-stage cirrhosis that predicts clinical deterioration
GSE66841 Gene expression profiles of Huh7.5.1 and HepG2 cells infected with HCV, HBV, HDV, and alcohol, and clinical liver tissues treated with various compounds of co-culture with LX2 cells
GSE66843 A cell-based model unravels drivers for hepatocarcinogenesis and targets for clinical chemoprevention
GSE85546 Prognostic Liver Signature profiles in post-transplant liver biopsy tissues from chronic hepatitis C patients
GSE85547 Prognostic Liver Signature profiles in biopsy tissues from chronic hepatitis C patients with HIV co-infection followed for fibrosis progression
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
Data table header descriptions ID type_of_probe category_of_probe order EntrezGeneID gene_symbol GB_ACC GenBank accession
Data table ID type_of_probe category_of_probe order EntrezGeneID gene_symbol GB_ACC FSHB
signature_gene
Poor_prognosis_gene
1
2488
FSHB
NM_000510.2 SH3GL2
signature_gene
Poor_prognosis_gene
2
6456
SH3GL2
NM_003026.2 RBM34
signature_gene
Poor_prognosis_gene
3
23029
RBM34
NM_015014.2 NCAPH
signature_gene
Poor_prognosis_gene
4
23397
NCAPH
NM_015341.3 EGF
signature_gene
Poor_prognosis_gene
5
1950
EGF
NM_001963.4 TRIO
signature_gene
Poor_prognosis_gene
6
7204
TRIO
NM_007118.2 COL6A3
signature_gene
Poor_prognosis_gene
7
1293
COL6A3
NM_057167.3 ABLIM1
signature_gene
Poor_prognosis_gene
8
3983
ABLIM1
NM_002313.5 ITGA9
signature_gene
Poor_prognosis_gene
9
3680
ITGA9
NM_002207.2 NTS
signature_gene
Poor_prognosis_gene
10
4922
NTS
NM_006183.4 SERPINB2
signature_gene
Poor_prognosis_gene
11
5055
SERPINB2
NM_002575.2 MMP7
signature_gene
Poor_prognosis_gene
12
4316
MMP7
NM_002423.3 PRKG2
signature_gene
Poor_prognosis_gene
13
5593
PRKG2
NM_006259.1 EDG4
signature_gene
Poor_prognosis_gene
14
9170
EDG4
NM_004720.5 NOS2A
signature_gene
Poor_prognosis_gene
15
4843
NOS2A
NM_000625.4 EPHA4
signature_gene
Poor_prognosis_gene
16
2043
EPHA4
NM_004438.3 SP100
signature_gene
Poor_prognosis_gene
17
6672
SP100
NM_003113.3 FMO1
signature_gene
Poor_prognosis_gene
18
2326
FMO1
NM_002021.1 GPX2
signature_gene
Poor_prognosis_gene
19
2877
GPX2
NM_002083.2 ATP4B
signature_gene
Poor_prognosis_gene
20
496
ATP4B
NM_000705.3
262 18 Kbytes .Supplementary data files not provided
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