GEO Accession viewer

GSE54881	Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis
GSE57936	Analysis of the RDR6-dependent small RNA profile in ein5 ski2 in Arabidopsis with biological replications and increased sequencing depth
GSE58217	Methylated DNA is over-represented in whole-genome bisulfite sequencing data
GSE58552	Analyses of blue light (BL) and CRY-regualted genes and genes dependent on auxin receptors by RNA-seq
GSE58788	MethlyC-Seq of Col-0 WT and mbd7-2(CS876032) mutant
GSE58789	ChIP-seq of WT(with 35S-SUC2 transgene) and proMBD7::gMBD7:4xMYC transgenic plants
GSE58790	MethlyC-Seq of ros1-13 mutant
GSE59677	Genome-wide Identification of APETALA1 Regulated Genes during Early Flower Development in Arabidopsis
GSE59699	Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
GSE59712	MethlyC-Seq of Col-0 WT, idm3-3 and mbd7-2 (CS876032) mutant
GSE59722	High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
GSE59763	Analyses of genes regulated by the N-terminal photolyase homology region (CNT1/PHR) of CRY1 by RNA-seq
GSE60141	A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq]
GSE60142	The DNA affinity purification DAP-Seq assay [ChIP-seq]
GSE60143	In vitro, genomic context identification of transcription factor binding sites
GSE61439	Pol-IV dependent transcripts in Arabidopsis
GSE61542	Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
GSE63355	Transcriptional response to zebularine and mitomycin C (MMC) in wild type and ATR deficient Arabidopsis thaliana plants
GSE63603	RNA-seq analysis of flg22-induced gene expression changes in wild type, asr3-1 mutant and OX9 overexpression line
GSE63879	tRNA-derived small RNAs target transposable element transcripts
GSE64397	Determinants of nucleosome positioning and their influence on plant gene expression
GSE64410	Translatome analyses of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation
GSE64501	Physiological and transcriptome responses to elevated CO2 and magnesium in Arabidopsis thaliana
GSE64870	Transcriptional response to UV treatment in several Arabidopsis thaliana accessions
GSE65016	mRNA-seq of ros1-3 and ros1-4 with ABA treatment
GSE65740	Transcriptome analysis of apoplastic reactive oxygen species signaling and dissection of its regulatory pathways
GSE66289	WRKY33 binding sites in Arabidopsis upon Botrytis cinerea 2100 inoculation
GSE66290	WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
GSE66300	Analysis of WRKY33 binding sites and WRKY33-dependent gene expression in Arabidopsis thaliana upon Botrytis cinerea 2100 inoculation
GSE66737	An PWI- and RRM Motif-Containing Protein Is Critical for Pre-mRNA Splicing and ABA Responses in Arabidopsis
GSE67797	A novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [RNA-Seq]
GSE67798	A novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [BS-Seq]
GSE67799	A novel BRAT1-BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis
GSE67956	BCAA catabolic mutants in prolonged darkness
GSE68080	Identification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis
GSE68154	Transitive silencing of mobile small RNAs in Arabidopsis Pollen
GSE68193	Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
GSE68684	KANADI1-regulated genes in shade
GSE69077	Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata
GSE69222	Comparative transcriptome profiling of Arabidopsis lyrata and Arabidopsis thaliana
GSE69431	Telomere Binding Protein TRB1 Preferentially Associates with Promoters of Translation Machinery genes
GSE70094	RNA-seq time-course analysis of the transcriptional dynamics of the two root-infecting fungi Colletotrichum tofieldiae (mutualistic) and Colletotrichum incanum (pathogenic) and their plant host Arabidopsis thaliana during root colonization
GSE70095	Directional RNA-Seq analysis of Arabidopsis plants grown under Pi-deprived conditions
GSE70290	Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin
GSE70491	The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping
GSE71085	Transcriptome Profiling of Two Separatively Reproduced Arabidopsis Lines
GSE71397	Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis
GSE71487	Enhancement of Arabidopsis growth characteristics using genome interrogation
GSE71488	Artificial transcription factor-induced salinity tolerance in Arabidopsis
GSE72260	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [RNA-Seq]
GSE72457	Global view of mRNA uridylation in Arabidopsis
GSE72458	Impact of URT1-mediated uridylation on small RNA tailing in Arabidopsis and global view of mRNA uridylation in Arabidopsis
GSE72522	Specific control of Arabidopsis BAK1- and SERK4-regulated cell death by protein glycosylation
GSE72548	RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
GSE72736	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis
GSE73067	Expression analysis by RNAseq of roots and shoots of the pho1 mutant expressing the EXS domain of PHO1
GSE73437	CPK signaling orchestrates the plant nitrate regulatory network
GSE73586	Geminivirus-encoded TrAP suppressor inhibits the histone methyltransferase SUVH4/KYP to counter host defense.
GSE73972	ATX3, ATX4, and ATX5 encode putative H3K4 methyltransferases and are critical for plant development
GSE74347	MethlyC-Seq of WT (35S-SUC2) and anti-silencing mutants (arp6-5, pie1-7, h2a.z-2, idm1-9 and ros1-14)
GSE74348	H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-5 and pie1-7
GSE74349	Anti-silencing mutants
GSE74386	Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis
GSE74458	Temporal and spatial domain-specific transcriptomic analysis of a vital reproductive meristem in Arabidopsis thaliana
GSE74692	Transcriptomics analysis of developing wild type and val1 mutant Arabidopsis embryos
GSE74722	Deciphering the cell-specific role of Arabidopsis Argonaute 3 [smallRNA-Seq]
GSE74723	Deciphering the cell-specific role of Arabidopsis Argonaute 3
GSE74731	Endogenous small RNAs from Arabidopsis thaliana wild-type, dcl4 mutant and dcl4 mutant expressing nuclear or cytoplasmic DCL4
GSE74856	Identification of plant vacuolar transporters mediating phosphate storage
GSE74864	Dehydration stress extends mRNA 3' untranslated regions with noncoding RNA functions in Arabidopsis
GSE74955	RNA-seq analysis of chitin-triggered transcriptional reprogramming in the Arabidopsis mapkkk5 mutant
GSE74972	Arabidopsis PHL2 act as the key component of the central regulatory system controlling transcriptional responses to phosphate starvation
GSE75288	Transcriptome changes triggered by the synthetic defense elicitors DPMP in Arabidopsis thaliana
GSE75506	Profiling of N6-Adenosine (m6A) Methylation in Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37
GSE75507	RNA-seq profiles of Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37
GSE75508	RNA-Seq and N6-Adenosine (m6A) Methylation profiling in Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37
GSE76281	Improving Alignment of Ambiguously Mapping Small RNAs
GSE76571	LHP1, CLF binding sites and their role in H3K27me3 spreading in Arabidopsis thaliana
GSE76577	Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana
GSE76649	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [small RNA-seq]
GSE76651	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis
GSE76798	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I)
GSE77169	Analysis of the mp clv3 transcriptome profile in Arabidopsis
GSE77549	Global analysis of truncated RNA ends reveals novel insights into ribosome stalling in plants
GSE77672	Genome-wide identiﬁcation of circular RNAs in Arabidopsis thaliana
GSE78089	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [Bisulfite-seq]
GSE78090	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing
GSE78727	Genome-wide binding sites for Arabidopsis REPLUMLESS
GSE78946	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type (Col), hda6, hda5, hda9, fld and fve mutants
GSE79119	Arabidopsis thaliana Col-0 inflorescence small RNAs
GSE79453	Arabidopsis FORGETTER1 sustains stress-induced transcription through nucleosome remodeling
GSE79523	Arabidopsis Messenger RNA N6-methyladenosine Demethylation Regulates Plant Development
GSE79524	Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis
GSE79708	Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq)
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem
GSE79839	Differential regulation of meristem size, morphology and organization by the ERECTA, CLAVATA and class III HD-ZIP pathways
GSE79855	Transcriptome analysis of apoplastic reactive oxygen species (ROS) signaling and dissection of the roles of WRKY25, WRKY33 and WRKY75 in the transcriptional reprogramming triggered by apoplastic ROS
GSE79856	Transcriptome analysis of estradiol-inducible overexpression of transcription factor WRKY75 in Arabidopsis thaliana
GSE79881	Auxin signaling in the epidermis regulates stem growth via interactions with the brassinosteroid pathway
GSE79885	The role of WRKY transcription factors in stress responses
GSE80350	Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization
GSE80370	Two components of the RNA-directed DNA methylation pathway associate with MORC6 and silence loci targeted by MORC6 in Arabidopsis
GSE80422	Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
GSE80423	Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
GSE80424	Study of expression changes during RPS4-mediated resistance in Arabidopsis using a temperature-inducible system which mirrors NLR activation
GSE80564	ChIP-seq of abscisic acid-reponsive transcription factors
GSE80565	RNA-seq of abscisic acid-reponsive transcription factors
GSE80566	ChIP-seq of abscisic acid-reponsive transcription factors [DIG]
GSE80567	RNA-seq of abscisic acid-reponsive transcription factors [DIG]
GSE80568	ChIP-Seq and RNA-Seq of abscisic acid-reponsive transcription factors
GSE80585	Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
GSE80744	Epigenomic and genome structural diversity in a worldwide collection of Arabidopsis thaliana
GSE80815	Transcriptomic analysis reveals the early signaling events of narciclasine in Arabidopsis root apex
GSE81202	Spatiotemporal analysis of shade-induced transcriptional reprogramming in Arabidopsis reveals patterns underlying organ-specific growth
GSE81205	The transcriptional outputs of AP2 and AG in floral development at the genomic scale
GSE81332	Ribosome profiling in Arabidopsis root and shoot
GSE81361	Nitric oxide(CysNO) mediated transcriptome profiling in Arabidopsis thaliana
GSE81407	Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals
GSE81496	Arabidopsis lyrata gene annotation using RNA-sequencing data
GSE81594	DNA N6-adenine methylation in Arabidopsis thaliana (RNA)
GSE81597	DNA N6-adenine methylation in Arabidopsis thaliana
GSE81668	The Proteasome Stress Regulon is Controlled by a Pair of NAC Transcription Factors in Arabidopsis
GSE81837	RNASequencing of nf-yc, hy5, and nf-yc hy5 mutants during photomorphogenic growth in Arabidopsis thaliana.
GSE82039	Endoplasmic reticulum as a hub organizing the activities of microRNAs and a subset of endogenous siRNAs in Arabidopsis [ncRNA-Seq]
GSE82040	Endoplasmic reticulum as a hub organizing the activities of microRNAs and a subset of endogenous siRNAs in Arabidopsis [RNA-Seq]
GSE82041	Endoplasmic reticulum as a hub organizing the activities of microRNAs and a subset of endogenous siRNAs in Arabidopsis
GSE82075	Genome-wide identification of nitric-oxide regulated H3K9/14ac sites in Arabidopsis thaliana
GSE83355	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status
GSE83800	small RNA profiling of WT, ros1-4, nrpd1 single mutants and ros1-4/nrpd1doubble mutant [small RNA-seq]
GSE83801	Whole genome bisulfite sequencing of nrpd1 mutant in C24 background [methyl-seq]
GSE83802	The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications
GSE84122	Paternal easiRNAs establish the triploid block in Arabidopsis
GSE84606	HOS1 versus hos1 mRNA sequencing
GSE84607	Cytoplasmic Control of Plastid Retrograde Signaling by SCFDIF-Mediated Degradation of DIFFERENTIATION AND GREENING-LIKE
GSE84955	Small RNAs from Cuscuta campestris parasitizing Arabidopsis thaliana
GSE85060	Whole genome bisulfite sequencing of hdp1-1 and hdp2-1and other relative mutants (all with 35S-SUC2 transgene)
GSE85279	H3K36me3 ChIP-seq
GSE85280	Temperature induced alternative splicing is affected in sdg8 and sdg26.
GSE85281	Temperature induced changes in the Arabidopsis transcriptome
GSE85282	H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis
GSE85516	Diversification of Root Hair Development Genes in Vascular Plants
GSE85551	sRNA drives epigenetic changes in F1 hybrids
GSE85759	Genomic architecture of biomass heterosis in Arabidopsis
GSE85778	Determination of ascorbate-, glutathione- and salicylate-responsive miRNAs in Arabidopsis
GSE85922	WRKY transcription factors in early MAMP-triggered immunity (ChIP-Seq)
GSE85923	WRKY transcription factors in early MAMP-triggered immunity (RNA-Seq)
GSE85924	WRKY transcription factors in early MAMP-triggered immunity
GSE86206	Transcriptome analysis of wild type, ar21 and i4g1 mutants in developing seeds
GSE86359	The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
GSE86360	The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [small RNA-seq]
GSE86361	The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings
GSE86401	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (smallRNAs)
GSE86403	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions
GSE86429	Vascular specific H3K27me3 and H3K4me3 profile in the Arabidopsis root
GSE86447	RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity
GSE87333	Small RNA-seq of ago4 null and slicing-defective mutant in Arabidopsis
GSE87336	RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
GSE87337	RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
GSE87338	RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
GSE87339	Direct transcriptional integration of phosphate starvation and disease resistance in response to a root microbiome
GSE87745	IMA1 OE #7-4 line compared to EYFP OE line (control)
GSE87916	Analysis of gene expression in a ATRX loss-of-function line [RNA-seq]
GSE87918	Analysis of gene expression and of H3.3 distribution and abundance in a ATRX loss-of-function line
GSE88798	Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
GSE88907	Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence
GSE89291	RNA-seq data for hdp1-1 and hdp2-1 mutants
GSE89294	Whole genome bisulfite sequencing of hdp1-1 and hdp2-1and other relative mutants (Col-0 background)
GSE89318	ChIP-seq data for HDP2 transgenic line
GSE89320	A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation
GSE89345	A single miR390 targeting event is sufficient for triggering TAS3-tasiRNA biogenesis in Arabidopsis.
GSE89346	BAF60 binding sites and their role in Modulating DNA accessibility in Arabidopsis thaliana
GSE89433	SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis
GSE89591	DNA sequence properties that determine susceptibility to epiallelic switching [Bisulfite-Seq]
GSE89592	DNA sequence properties that determine susceptibility to epiallelic switching
GSE89768	POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. [ChIP-Seq]
GSE89770	POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis.
GSE90004	Next-Generation Sequencing Facilitates Quantitative Analysis of Wild Type and abi5 Transcriptomes
GSE90071	Infection of Arabidopsis thaliana seedlings with the Pseudomonas syringae strain DC3000 cor- carrying the effector HopBB1
GSE90075	Infection of Arabidopsis thaliana seedlings (Col-0, UBQ10::YFP-TCP14-4, tcp14-6 and coi1-16) with the Pseudomonas syringae strain DC3000 cor-
GSE90077	RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or BTH
GSE90078	RNA-seq of transgenic Arabidopsis thaliana seedlings expressing the Pseudomonas syringae effector HopBB1
GSE90080	RNA-seq of Arabidopsis thaliana seedlings overexpressing the transcription factor TCP14
GSE90083	RNA-seq of Arabidopsis thaliana seedlings with T-DNA insertions in TCP14
GSE90606	The Pseudomonas syringae type III effector HopBB1 fine tunes pathogen virulence by degrading host transcriptional repressors
GSE90771	Differential expression of microRNAs in wildtype versus DCL1 mutants in Arabidopsis thaliana
GSE92309	A specific dsRNA-binding protein complex selectively sequesters endogenous Inverted-Repeat siRNA precursors and inhibits their processing.
GSE92314	Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq]
GSE92371	Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants
GSE92419	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (II)
GSE92444	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants
GSE92702	Early ETI and PTI responses in Arabidopsis thaliana camta3-D (sr1-4d) mutant
GSE93232	Analysis of transcriptome between clv3 and mpclv3
GSE93243	small RNA-Seq of WT, snrk2.2/3/6, and hyl1-2
GSE93355	sRNA expression in the Pol V largest subunit mutant, nrpe1-11
GSE93360	Functional analysis of the RNA polymerase V CTD
GSE93393	Jasmonate Regulates Plant Responses to Reoxygenation through Activation of Antioxidant Synthesis
GSE93584	A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements
GSE94022	Profiling of 5-methylcytosine (m5C) methylation in Arabidopsis thaliana wild-type
GSE94065	5-Methylcytosine RNA methylation in Arabidopsis thaliana
GSE94075	The Arabidopsis DNA methylome is relatively impervious to abiotic stress
GSE94307	Control of plant cell fate transitions by transcriptional and hormonal signals [ChIP-seq]
GSE94310	Control of plant cell fate transitions by transcriptional and hormonal signals [RNA-seq: mock_vs_dex_14h]
GSE94311	Control of plant cell fate transitions by transcriptional and hormonal signals
GSE94377	Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis
GSE94486	A B-ARR-mediated cytokinin transcriptional network directs hormone-cross regulation and shoot development
GSE94710	Dynamic DNA methylation reconfiguration during seed development and germination (MethylC-seq)
GSE94711	Dynamic DNA methylation reconfiguration during seed development and germination (RNA-seq)
GSE94712	Dynamic DNA methylation reconfiguration during seed development and germination
GSE94786	A small RNA pathway mediates allelic dosage in endosperm [mRNA-seq]
GSE94792	A small RNA pathway mediates allelic dosage in endosperm
GSE94995	Ascorbate concentration in Arabidopsis is controlled at the gene expression level mainly by GDP galactose phosphorylase
GSE95198	Cooperative regulatory functions of miR858 and MYB83 in transcriptome reprogramming during cyst nematode parasitism of Arabidopsis
GSE95301	Chromatin-Bound ARGONAUTE 1 Promotes Gene Transcription in Response to Various Stimuli in Arabidopsis
GSE95574	Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
GSE96834	The histone H3 variant H3.3 regulates gene body DNA methylation [ChIP-seq]
GSE96873	The histone H3 variant H3.3 regulates gene body DNA methylation
GSE96945	RNA-seq analysis of WT and SCL28-OX in the Arabidopsis thaliana root tip
GSE96951	small RNA-seq of Ler. WT and Ler; 35S-HA-RICE1 D52A transgenic plant
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes
GSE97499	Genome-wide binding analysis of Arabidopsis GATA transcription factors GNC and CGA1
GSE97792	Inferring Gene Regulatory Networks that control maintenance and identity of the Arabidopsis Root Stem Cells
GSE97857	Time course of the Arabidopsis thaliana root meristem
GSE98035	Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing [RNA-seq]
GSE98046	Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana [im-nc]
GSE98047	Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana
GSE98075	Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant
GSE98097	High-resolution gene expression datasets of ontogenetic zones in the root apical meristem
GSE98204	Cell type transcriptomic profile of the Arabidopsis root stem cell niche
GSE98214	Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis
GSE98301	H3K27 tri-methyltransferases CLF and SWN redundantly buffer ABA-induced senescence
GSE98553	Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data
GSE98655	A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis
GSE99226	Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis.
GSE99290	Functional analysis of evening complex component LUX in Arabidopsis
GSE99405	Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
GSE99406	Identifications of a novel group of intra-genic interactive putative enhancers reveals a distinctive enhancer architectures in plants
GSE99427	Identification of AtGRP7 targets by iCLIP
GSE99482	Arabidopsis epiRILs, epiHybrids and Colombia wild type
GSE99581	Gene expression profiling of the Arabidopsis glucosinolate deficient mutants, ref5-1 and ref2-1 and med5 mutants
GSE99616	Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7
GSE99677	An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress
GSE99689	Locus-specific control of the de novo DNA methylation pathway [MethylC-seq]
GSE99691	Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
GSE99692	Locus-specific control of the de novo DNA methylation pathway [smRNA-seq]
GSE99693	Locus-specific control of the de novo DNA methylation pathway [ChIP-seq]
GSE99694	Locus-specific control of the de novo DNA methylation pathway
GSE99805	The Nonstop decay and the RNA silencing systems operate cooperatively in plants
GSE99826	Exhaustive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including hitherto undescribed AGO5-associated pseudogene-derived siRNAs (psiRNAs) [RNA]
GSE99827	Exhaustive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including hitherto undescribed AGO5-associated pseudogene-derived siRNAs (psiRNAs) [sRNA]
GSE99828	Exhaustive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including hitherto undescribed AGO5-associated pseudogene-derived siRNAs (psiRNAs)
GSE99936	MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity
GSE99982	Arabidopsis NAP-related proteins (NRPs) contribute to the coordination of plant growth, developmental rate, and age-related pathogen resistance under short days
GSE100010	RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis
GSE100011	Ectopic application of the repressive histone modification H3K9me2 establishes postzygotic reproductive isolation in Arabidopsis thaliana
GSE100187	Transcriptome profiling of mutants of CALMODULIN-LIKE (CML) family genes and CALMODULIN-BINDING PROTEIN 60 (CBP60) family genes in response to Pseudomonas syringae pv maculicola ES4326
GSE100371	mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
GSE100395	Arabidopsis thaliana AGO1 immunoprecipitated small RNA from Col0 plants transformed with a transgene expressing wild-type or a nuclear localized form of AGO1 fused to GFP.
GSE100595	Genomic architecture of biomass heterosis in Arabidopsis
GSE101197	Transcriptome analysis using RNA sequencing conducted for wild type (Col-0), ahl10-1 and rrp6l1-2 mutant under control conditions and after 96 h at moderate low water potential (-0.7 MPa)
GSE101219	DNA replication-coupled histone modification maintains Polycomb gene silencing in plants [RNA-seq]
GSE101221	DNA replication-coupled histone modification maintains Polycomb gene silencing in plants
GSE101488	Combining chemical and genetic approaches to increase drought resistance in plants
GSE101777	LHP1 interacts with ATRX through plant-specific domains at specific loci targeted by PRC2
GSE101873	Analyses of red light-regulated genes by RNA-seq
GSE101875	Analyses of phyB-regulated genes by RNA-seq
GSE102248	RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
GSE102363	Transcriptome profiling of ozone responses of Arabidopsis thaliana natural accessions Col-0 and Cvi-0, and a near-isogenig line Col-S with Cvi-0's ozone sensitivity introgressed into Col-0
GSE102509	Comparison of sRNA populations obtained using HD adapters in A thaliana, with NEB RecJ exonuclease or Superscript II enzymes
GSE102510	Comparison of mRNA-seq quantification from libraries obtained using either HD or standard Illumina adapters in A thaliana, in wildtype and DCL1 mutants
GSE102545	Comparison of sRNA populations obtained using HD or standard Illumina adapters in A thaliana, with or without TAP treatment
GSE102713	RNA-seq of genes mis-regulated in WT and the bpc1,2,3,4,6 loss-of-function mutant in response to cytokinin in roots of Arabidopsis thaliana
GSE102950	Plant abiotic stress tolerance conferred by the desert endophytic bacterium Enterobacter sp. SA187 is mediated through enhanced ethylene signalling
GSE103361	Analysis of the contributions of PKL, CLF, and PIE1 to gene expression, H2A.Z levels, and H3K27me3 levels in Arabidopsis
GSE103423	Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing
GSE104015	Total and AGO1 immunoprecipitated small RNA from Arabidopsis thaliana wild-type and ago1-57 mutant
GSE104028	Analysis of the translational landscape of Arabidopsis mitochondria
GSE104083	CPL4 is a suppressor of de novo shoot organogenesis from roots of Arabidopsis thaliana
GSE104146	Comparison between ethylene signaling regulated transcriptome with glucose-TOR or glucose-HXK1 regulated transcriptome
GSE104368	Genome-wide mapping of EARLY BOLTING IN SHORT DAYS (EBS) binding sites in Arabidopsis thaliana
GSE104369	Genome-wide mapping of SHORT LIFE (SHL) binding sites in Arabidopsis thaliana
GSE104370	RNA-seq analysis of emf1, lhp1, ebs shl and ebs shl lhp1 transcriptomes in Arabidopsis thaliana
GSE104518	RNA-Seq analysis comparing gene expression changes between Col-0 wild-type (WT) and sig2-2 mutant lines at the whole genome level
GSE104799	Computational guideline for small RNA profiling in virus-infected plants
GSE104945	Transcriptional profile of wox5-1 and seu-3 mutants
GSE105262	Comprehensive Analysis of RDR1/2/6-independent Small RNAs in Arabidopsis thaliana
GSE106112	microRNA-triggered transposon small RNAs mediate genome dosage response (Bisulfite-Seq)
GSE106113	microRNA-triggered transposon small RNAs mediate genome dosage response (RNA-Seq)
GSE106115	microRNA-triggered transposon small RNAs mediate genome dosage response (mir845 sRNA-Seq)
GSE106117	microRNA-triggered transposon small RNAs mediate genome dosage response
GSE106284	Potential role of the CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
GSE106370	RNA Seq analysis of dark-grown hypocotyl comparing wild type with shr mutant.
GSE106383	Characterization of DCL4 missense alleles provides novel insights into its ability to process distinct classes of dsRNA substrates
GSE106459	Next Generation RNA Sequencing reveals defects in nuclear mRNA maturation of Arabidopsis thaliana lefko1 mutant
GSE106574	Light and G Protein Coordinate Regulation of Arabidopsis Photomorphogensis
GSE106811	Global transcriptome of Arabidopsis thaliana and Solanum lycopersicum infected by S. sclerotiorum
GSE107018	Direct role of MUTE in cell state switch and symmetric cell division to create stomata
GSE107070	Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3’ to 5’ exoribonuclease ATRIMMER2 in Arabidopsis
GSE107276	Transcriptome Analysis of Arabidopsis Root Development in Response to Treatment With Rhizobium sp. IRBG74
GSE107700	Equal parental contribution to the transcriptome is not equal control of embryogenesis
GSE107750	H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-4 and pie1-6
GSE107751	The SWR1 Complex Regulates Active DNA Demethylation in Arabidopsis
GSE107752	35S-SUC2 WT and antisilencing mutants
GSE107820	Heat stress induced alternative splicing in a species-dependent manner
GSE108078	RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis.
GSE108117	Formaldehyde-crosslinking and immunoprecipitation (FA-CLIP) sequencing to identify ECT2 targets in Arabidopsis
GSE108118	RNA-seq of WT (Col-0) and ect2 in Arabidopsis
GSE108119	RNA-seq and FA-CLIP studying ECT2 function in Arabidopsis
GSE108401	The Complex Architecture of Transgene Insertions
GSE108414	A DNA methylation reader complex that enhances gene transcription
GSE108673	RNA polymerase II-Independent Recruitment of SPT6L at Transcription Start Sites in Arabidopsis
GSE108858	SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production (miRNA-Seq)
GSE108859	SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production
GSE108898	The calmodulin-like protein, CML39, is involved in regulating seed development, germination, and fruit development in Arabidopsis
GSE108932	Circadian Clock- and Transcription-controlled Genome-wide Excision Repair of UV Damage in Arabidopsis
GSE108960	Genome-wide occupancy of histone H3K27 methyltransferases CURLY LEAF and SWINGER in Arabidopsis seedlings
GSE109149	Principles and characteristics of the WRKY regulatory network of early MAMP-triggered immunity [ChIP-Seq]
GSE109150	Principles and characteristics of the WRKY regulatory network of early MAMP-triggered immunity [RNA-Seq]
GSE109151	Principles and characteristics of the WRKY regulatory network of early MAMP-triggered immunity
GSE109974	RNA polymerase II activity revealed by GRO-seq and pNET-seq in Arabidopsis
GSE109977	Identification of LEC1 binding sites in Arabidopsis seeds during embryo expansion stage
GSE110125	Transcriptome response study of arabidopsis wild type (Col6-3), gun1-9 mutant and MORF2 overexpression lines to norflurazon treatment in retrograde signaling
GSE110336	Four SWI2/SNF2 chromatin remodeling proteins play roles as “double agents” in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis [Bisulfite-seq]
GSE110337	Four SWI2/SNF2 chromatin remodeling proteins play roles as “double agents” in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis [small RNA]
GSE110338	Four SWI2/SNF2 chromatin remodeling proteins play roles as "double agents" in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis
GSE110342	Impact of G-content on Arabidopsis AtPAB binding and their role in enhancing translational efficiency
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
GSE110940	sRNAseq from Arabidopsis leaves non-infected and infected with Turnip mosaic virus (TuMV)
GSE111062	Time-course transcriptomic analysis of Arabidopsis response to high light stress
GSE111239	The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs [small RNA]
GSE111290	Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1
GSE111380	The roles of red light and phytochrome A/B in photomorphogenesis
GSE111609	Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
GSE111742	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [Bisulfite-Seq]
GSE111811	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [ChIP-Seq]
GSE111812	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
GSE111813	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [sRNA-Seq]
GSE111814	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression
GSE112368	Transcriptome analysis using RNA sequencing conducted for wild type (Col-0) and ahl10-1 mutant under control conditions and after 96 h at moderate low water potential (-0.7 MPa)
GSE112529	The SOG1 transcriptional activator and the MyB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [SOG1 ChIP-seq]
GSE112531	The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq DREMmodel]
GSE112543	The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq gIR vs mock wt]
GSE112544	The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq myb3r135 vs wt]
GSE112563	TuxNet: A simple interface to process RNA sequencing data and infer gene regulatory networks
GSE112564	TuxNet: A simple interface to process RNA sequencing data and infer gene regulatory networks [XVE:PAN]
GSE112748	The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0]
GSE112773	The SOG1 transcriptional activator and the MYB3R repressors control a complex gene network in response to DNA damage in Arabidopsis
GSE112861	In planta dynamics, transport-biases and endogenous functions of mobile siRNAs in Arabidopsis
GSE112869	nanoPARE: Parallel analysis of RNA 5' ends from low input RNA
GSE112885	small RNA sequences from grafted Arabidopsis thaliana expressing SucSUL inverted repeat
GSE112929	Movement of Arabidopsis thaliana inverted repeat small RNA between leaves vascular and epidermis tissues
GSE113029	Detection of siRNA movement in Arabidopsis thaliana using P19 under root cell layer specific expression
GSE113310	Functional characterization of NSE4A subunit of SMC5/6 complex in Arabidopsis
GSE113989	Hybrid vigour can be enhanced by delayed leaf senescence
GSE114075	Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation
GSE114194	mRNA sequencing of PPD3 over expression in Col-0 background in Arabidopsis
GSE114250	Interdependent nutrient availability and steroid hormone signals facilitate root growth plasticity
GSE114379	Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant
GSE114430	ChIP-Seq of Arabidopsis Transcription Factors MYC2 and MYC3
GSE114615	Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation
GSE114645	Leaf age dependent transcriptome analysis in response to abscisic acid
GSE114682	A regulatory module controls plant growth and stress response by modulating hormone level
GSE114782	An essential role for Abscisic acid in the regulation of xylem fibre differentiation
GSE115170	Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis
GSE115358	Light releases the TCP4-SAUR16/50 transcription module from the repression of PIF3 to facilitate cotyledon opening during de-etiolation [ChIP-Seq]
GSE115584	Light releases the TCP4-SAUR16/50 transcription module from the repression of PIF3 to facilitate cotyledon opening during de-etiolation [RNA-seq]
GSE115589	Light releases the TCP4-SAUR16/50 transcription module from the repression of PIF3 to facilitate cotyledon opening during de-etiolation
GSE115838	Genome-wide analyses reveal the coordination between alternative splicing and DNA methylation for light response in plants
GSE115991	Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions
GSE116065	The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [ChIP-Seq]
GSE116067	The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [smallRNA-Seq]
GSE116068	The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing
GSE116069	Calmodulin-binding transcription activator (CAMTA) 6 is a key regulator of Na+ homeostasis and salinity stress responses during early germination
GSE116269	Transcriptome analysis of EDS1-R493A after Pst AvrRps4- triggered immunity
GSE116287	Cytokinin modulates chromatin accessibility in a context-dependent manner through the type-B response regulators
GSE116643	H2A.W is essential for silencing of whole genome heterochromatin in Arabidopsis
GSE117014	RNA polymerase II activity revealed by GRO-seq and pNET-seq in Arabidopsis
GSE117052	Transcriptome analysis of apoplastic reactive oxygen species signaling in Arabidopsis thaliana accessions with varying ozone sensitivity.
GSE117316	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation
GSE117318	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation
GSE117969	The repressive role of H2A.Z variant in transcriptional regulation depends on AtBMI1 activity in Arabidopsis
GSE118025	Genome-wide maps of LDL1pro::LDL1:GFP in 14 days old arabidopsis
GSE118102	From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots.
GSE118136	Cell-type specific transcriptome and histone modification dynamics during in situ cellular reprogramming in the Arabidopsis stomatal lineage [ChIP-Seq]
GSE118137	Cell-type specific transcriptome and histone modification dynamics during in situ cellular reprogramming in the Arabidopsis stomatal lineage [RNA-Seq]
GSE118138	Cell-type specific transcriptome and histone modification dynamics during in situ cellular reprogramming in the Arabidopsis stomatal lineage
GSE118215	Widespread EJC footprints in the RNA degradome mark mRNA degradation before steady-state translation
GSE118270	CsGSTF1 is able to rescue the anthocyanin deficient phenotype of tt19-8 mutant
GSE118371	A variably imprinted epiallele impacts seed development
GSE118427	Phytoplasma SAP11 homologs differentially modulate development and defence in Arabidopsis and maize via destabilization of specific TCPs
GSE118705	Small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls
GSE118709	Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls
GSE118824	Expression profiles of dark or red-light treated WT and phytochrome mutants
GSE119330	Diel and circadian gating of Arabidopsis thermotolerance and transcriptional response to heat stress.
GSE119706	RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4
GSE119915	Epigenetic signatures associated with paternally-expressed imprinted genes in the endosperm
GSE119986	Arabidopsis seedling hydroponic treatment with Streptomyces AGN23 culture supernatants
GSE120519	Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
GSE120664	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin
GSE120668	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin
GSE120669	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin
GSE120709	Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
GSE120791	A chimeric IDD4 repressor constitutively induces immunity in Arabidopsis with the potential application for crop improvement
GSE121236	The embryonic transcriptome of Arabidopsis thaliana
GSE121383	High temperature transcriptomes of mutants in HDA9, PIF4 and Col-0 wild type of young Arabidopsis seedlings
GSE121450	The Protein Phosphatase 4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis [RNA-Seq]
GSE121453	The Protein Phosphatase 4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis [ncRNA-Seq]
GSE121456	The Protein Phosphatase 4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis
GSE121567	Next Generation Sequencing Facilitates Quantitative Analysis of PSKγ1ox and control Transcriptomes
GSE121674	Alterations in Gene Expression in Arabidopsis thaliana Expressing ISPS
GSE121676	Alterations in Gene Expression in Arabidopsis thaliana and Nicotiana tabacum Expressing ISPS
GSE122047	The Histone Deacetylases HDA6 and HDA9 coordinately regulate valve cell elongation through depressing auxin signaling in Arabidopsis
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator
GSE122373	Whole genome bisulfite sequencing of arp6-5 and pie1-7 Arabidopsis mutants
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
GSE122495	SERINE/THREONINE-PROTEIN PHOSPHATASE7-LIKE PP7L Regulates Chloroplast Development
GSE122687	High-throughput single-cell transcriptome profiling of plant cell types
GSE122770	RNA-seq from roots of 14 day old col-0 Arabidopsis thaliana carrying INTACT
GSE122771	ATAC-seq on 14-d-old WT col-0 Arabidopsis thaliana roots carrying INTACT
GSE122772	Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq
GSE122804	Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress
GSE123261	Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ChIPSeq_MBD9]
GSE123263	Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition.
GSE123303	Transcript profiles of developing Arabidopsis dgat1-1 mutant seed
GSE123583	Functional relationship of GUN1 and FUG1 in plastid proteostasis
GSE123602	Low-input chromatin profiling in Arabidopsis endosperm using CUT&RUN
GSE123648	RIP-seq of the Arabidopsis mRNA export mutant aly1 and associated controls.
GSE123656	Compared gene expression during seed germination (12 hai) in the nac25 (KO2) and nac1L (KO1) null mutants and wild-type (Columbia-0) controls using deep sequencing of RNA populations (RNA-seq).
GSE123910	Illumina Sequencing of Wild Type, nerd-1 and cpsf30-1 mutant plants
GSE123984	Transcriptional profile of TCX2 mutant
GSE124098	Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissue
GSE124108	Auxin regulates endosperm cellularization in Arabidopsis
GSE124318	H3K4me3 profiling in SWD2-like Arabidopsis mutant seedlings
GSE124319	ChIP-seq and RNA-seq in HUB1 and SWD2 Arabidopsis mutant seedlings
GSE124377	A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes [ChIP-seq]
GSE124414	Genome-wide analysis of histone H3 acetylation levels of wild type, hda6, hdc1, and hda19 in short day conditions [ChIP-seq]
GSE124485	A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes [RNA-seq]
GSE124486	A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes
GSE124499	Genome-wide analysis of wild type, hda6, hdc1, and hda19 in short and long day conditions
GSE124546	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis
GSE124635	A Group of SUVH Methyl-DNA Binding Proteins Regulate Expression of the DNA Demethylase ROS1 in Arabidopsis
GSE124744	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [BS-PCR-seq]
GSE124749	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [small RNA-seq]
GSE124866	Tissue-specific structurome changes in the RNA structurome mediate salt salinity response in Arabidopsis
GSE125230	Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems
GSE125515	Arabidopsis thaliana FIBRILLIN6 is involved in acclimation to moderate light stress and cadmium tolerance
GSE125894	Comparison of transcriptomic responses to individual and combinatorial copper and iron deficiencies in Arabidopsis thaliana rosettes.
GSE125950	Comparison of transcript profiles of acclimated and de-acclimated Arabidopsis plants to high light, cold and heat.
GSE126482	FIERY1 promotes microRNA accumulation by suppressing rRNA-derived small interfering RNAs in Arabidopsis [miRNA-seq]
GSE126809	AtMBD9 ChIP-seq
GSE126889	Genome-wide occupancy of Arabidopsis SWI/SNF chromatin remodeler SPLAYED provides insights into its interplay with its close homolog BRAHMA and Polycomb proteins
GSE126927	Inositol pyrophosphate InsP8 acts as intracellular phosphate signal in Arabidopsis
GSE126929	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [Bisulfite-seq]
GSE126930	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [miRNA-Seq]
GSE126931	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [RNA-Seq]
GSE126932	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage
GSE127146	Ribosome footprinting of wild-type Col-0 and rlmnl3 mutant
GSE127749	Generation Sequencing Facilitates Quantitative Analysis of Wild Type and AGC1-4 Transcriptomes
GSE127759	Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
GSE127805	Transcriptome analysis using RNA sequencing conducted for wild type (Col-0) and a stable transgenic line with ectopic expression of AT3G11290 (35S:HIN1) under control conditions and after 96 hours at moderate low water potential stress (-0.7 MPa)
GSE127819	A role for PICKLE in the regulation of cold stress response in Arabidopsis
GSE127910	RNA-seq analysis of Arabidopsis treated with abscisic acid (ABA) and its derivatives
GSE127919	Transcriptomic analysis of pip5k1 pip5k2 mutant and wild type plants before or after inoculation with powdery mildew Erysiphe cichoracearum
GSE127992	The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development [small RNA]
GSE127993	The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development
GSE128168	Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response [ChIP-Seq]
GSE128170	Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response [RNA-Seq]
GSE128171	Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response
GSE128316	Genome-wide changes in active RNAPII occupancy in the presence of mutated TFIIS (TFIISmut)
GSE128484	Intragenic Heterochromatin-dependent RNA Polyadenylation mediated by a Protein Complex in Arabidopsis [ChIP-seq]
GSE128498	Arabidopsis PP6 phosphatases dephosphorylate PIF proteins to repress photomorphogenesis.
GSE128501	Intragenic Heterochromatin-dependent RNA Polyadenylation mediated by a Protein Complex in Arabidopsis [RIP-seq]
GSE128540	Intragenic Heterochromatin-dependent RNA Polyadenylation mediated by a Protein Complex in Arabidopsis
GSE128698	Immediate transcriptional responses to heat shock of plant leaf
GSE128799	Transcriptomic analysis of lpcat1/2 mutant and wild type plants
GSE128877	Transcription and export complex (THO/TREX) coordinates transcription termination in Arabidopsis
GSE128946	The AP2/ERF Transcription Factor TINY Modulates Brassinosteroid-Regulated Plant Growth and Drought Response in Arabidopsis
GSE129190	Phloem-related genes are downregulated during radial growth of smxl4 smxl5 double mutant stems
GSE129394	RNA-seq of the roots of Arabidopsis thaliana plants growing in soil treated under different fertilization regimes.
GSE129395	RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a 185-members bacterial synthetic community under full and low phosphate conditions
GSE129396	The effects of soil phosphorous content on microbiota are driven by the plant phosphate starvation response
GSE129744	The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons
GSE130337	Defects in secondary cell-wall synthesis mitigate the effects of lincomycin on early chloroplast development
GSE130510	Disruption of miRNA Sequence by TALENs and CRISPR/Cas9 Induces Varied Length of miRNA Production [CRISPR/Cas9]
GSE130729	RNA-seq data for Arabidopsis cbfs-1
GSE130964	Transcriptomics of the plant growth regulator Heatin
GSE131009	Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis
GSE131156	RNA-seq of Arabidopsis thaliana seedlings growing axenically, or in the presence of different bacterial Synthetic Community treatments that induced different root morphology
GSE131157	RNA-seq of Arabidopsis thaliana seedlings growing axenically or in the presence of Arthrobacter CL28, isolate Variovorax CL14, or both isolates together
GSE131158	Variovorax enforce stereotypic root development
GSE131610	The Arabidopsis YDL1 suppresses singlet oxygen-induced gene expression changes
GSE131808	SIN3 LIKE genes mediate long-day induction of flowering but inhibit the floral transition in short days through histone deacetylation in Arabidopsis
GSE131988	Time course of the Arabidopsis root stem cells
GSE132005	Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs
GSE132066	MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis
GSE132249	Identification of root transcriptional responses to shoot illumination in Arabidopsis thaliana
GSE132316	A MYC2, MYC3, MYC4-dependent transcription factor network regulates touch responses in plants
GSE132485	MicroRNA function transitions from regulating developmental genes to transposable elements during the maturation of pollen
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