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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 22, 2013 |
| Title |
NanoString nCounter Human v1 miRNA Expression Assay |
| Technology type |
other |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NanoString |
| Manufacture protocol |
See manufacturer's website (www.nanostring.com)
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| Submission date |
Oct 21, 2013 |
| Last update date |
Oct 22, 2013 |
| Contact name |
Shirley Tam |
| E-mail(s) |
shirley.tam@mail.utoronto.ca
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| Organization name |
Ontario Institute for Cancer Research
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| Department |
Genome Technologies
|
| Street address |
661 University Avenue, Suite 510, MaRS Building, West Tower
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Samples (10)
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GSM1246638, GSM1246639, GSM1246640, GSM1246641, GSM1246642, GSM1246643
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| Series (2) |
| GSE51504 |
Comparison of microRNA Profiling Platforms (NanoString) |
| GSE51508 |
Comparison of microRNA Profiling Platforms |
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| Data table header descriptions |
| ID |
Probe name |
| SPOT_ID |
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| miRNA_ID |
|
| Code Class |
|
| Accession |
|
| Target Sequence |
Sequence targeted by probe |
| Data table |
| ID |
SPOT_ID |
miRNA_ID |
Code Class |
Accession |
Target Sequence |
| POS_A(128) |
nmiR00813.1 |
|
Positive |
nmiR00813.1 |
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| POS_B(32) |
nmiR00809.1 |
|
Positive |
nmiR00809.1 |
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| POS_C(8) |
nmiR00811.1 |
|
Positive |
nmiR00811.1 |
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| POS_D(2) |
nmiR00822.1 |
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Positive |
nmiR00822.1 |
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| POS_E(0.5) |
nmiR00801.1 |
|
Positive |
nmiR00801.1 |
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| POS_F(0.125) |
nmiR00825.1 |
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Positive |
nmiR00825.1 |
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| NEG_A(0) |
nmiR00810.1 |
|
Negative |
nmiR00810.1 |
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| NEG_B(0) |
nmiR00817.1 |
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Negative |
nmiR00817.1 |
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| NEG_C(0) |
nmiR00828.1 |
|
Negative |
nmiR00828.1 |
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| NEG_D(0) |
nmiR00818.1 |
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Negative |
nmiR00818.1 |
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| NEG_E(0) |
nmiR00803.1 |
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Negative |
nmiR00803.1 |
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| NEG_F(0) |
nmiR00823.1 |
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Negative |
nmiR00823.1 |
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| NEG_G(0) |
nmiR00827.1 |
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Negative |
nmiR00827.1 |
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| NEG_H(0) |
nmiR00805.1 |
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Negative |
nmiR00805.1 |
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| ACTB |
NM_001101.2 |
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Housekeeping |
NM_001101.2 |
TGCAGAAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCT |
| B2M |
NM_004048.2 |
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Housekeeping |
NM_004048.2 |
CGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCA |
| GAPDH |
NM_002046.3 |
|
Housekeeping |
NM_002046.3 |
TCCTCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAACGGATTT |
| RPL19 |
NM_000981.3 |
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Housekeeping |
NM_000981.3 |
CCAATGCCCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGCCA |
| RPLP0 |
NM_001002.3 |
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Housekeeping |
NM_001002.3 |
CGAAATGTTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGCGGGAAGGCTGTGGTGCTGATGGGCAAGAA |
| hsa-let-7a |
MIMAT0000062 |
MIMAT0000062 |
Endogenous1 |
MIMAT0000062 |
UGAGGUAGUAGGUUGUAUAGUU |
Total number of rows: 753
Table truncated, full table size 64 Kbytes.
| Supplementary data files not provided |
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