GEO help: Mouse over screen elements for information.
Status
Public on Jun 19, 2014
Title
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array (mogene10st_annotation.csv)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Description
Probe sequences of pm probes were retrieved using the Bioconductor packages oligo (version 1.22.0) and pd.mogene.1.0.st.v1. Probes were mapped to the mouse RefSeq transcriptome as downloaded from the UCSC Genome Browser mm10 refGene table on February 5, 2013. Probes that match transcripts of more than one gene (as defined by a common gene symbol) were excluded. For mapping and further processing of probe information, the Bioconductor packages seqinr and Biostrings and in-house developed Perl scripts were used.
Submission date
Nov 18, 2013
Last update date
Jun 19, 2014
Contact name
Johanna Daniela Schott
E-mail(s)
johanna.schott@medma.uni-heidelberg.de Organization name
Heidelberg University
Department
Mannheim Institute for Innate Immunoscience
Lab
Stoecklin lab
Street address
Ludolf-Krehl-Str. 13-17
City
Mannheim
ZIP/Postal code
68167
Country
Germany
Samples (30)
GSM1267118 , GSM1267119 , GSM1267120 , GSM1267121 , GSM1267122 , GSM1267123
GSM1267124 ,
GSM1267125 ,
GSM1267126 ,
GSM1267127 ,
GSM1267128 ,
GSM1267129 ,
GSM1267130 ,
GSM1267131 ,
GSM1267132 ,
GSM1267133 ,
GSM1267134 ,
GSM1267135 ,
GSM1267136 ,
GSM1267137 ,
GSM1267138 ,
GSM1267139 ,
GSM1267140 ,
GSM1267141 ,
GSM1267142 ,
GSM1267143 ,
GSM1267144 ,
GSM1267145 ,
GSM1267146 ,
GSM1267147 Series (2)
GSE52449 Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation [array]
GSE52451 Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation
Data table header descriptions ID Ref_ID (probe set IDs match those in mogene10st_annotation.csv annotation file)
GB_LIST GenBank Accession number(s)
ORF ORF Name
probe_number SPOT_ID
20793 623 Kbytes .Supplementary file Size Download File type/resource GPL17940_mogene10st_annotation.csv.gz
14.6 Mb
(ftp) (http) CSV
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