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Platform GPL20714 Query DataSets for GPL20714
Status Public on Jul 21, 2015
Title Agilent-034627 AE2011SS Aedes aegypti array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Aedes aegypti
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034627 or 2534627.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 20, 2015
Last update date Jul 21, 2015
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Samples (42) GSM1830774, GSM1830775, GSM1830776, GSM1830777, GSM1830778, GSM1830779 
Series (3)
GSE71221 Aedes aegypti (Aag2) Cells: Control (CTR) vs. Heme-incubated / Control vs. Paraquat-incubated
GSE90515 Fat body and midgut transcriptome of Wild-type vs. transgenic Aedes aegypti overexpressing JAK/STAT pathway components
GSE99799 Aedes aegypti response to bloodfeeding and bacterial ingestion in midgut tissues of females from two strains

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
ACCESSION
REFSEQ RefSeqAccession
CONTROL_TYPE Control type
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID ACCESSION REFSEQ CONTROL_TYPE DESCRIPTION SEQUENCE
1 192 328 GE_BrightCorner GE_BrightCorner pos
2 192 326 DarkCorner DarkCorner pos
3 192 324 DarkCorner DarkCorner pos
4 192 322 AAEL004849-RA 11651 AAEL004849-RA 11651 FALSE unmapped GAAACTTGAATATCATTTCATAATGAAGCATACCGTCACTACGTTAATGCTATATTT
5 192 320 AAEL009652-RA 10464 AAEL009652-RA 10464 FALSE unmapped GTTAAATGATATACGTCTCAGTGAATGAATAGATTTTATGGATCATATACTTTAAAA
6 192 318 AAEL015087-RA 39416 AAEL015087-RA 39416 FALSE unmapped CGTGTACGATAGCACCATATCCCGGAGTATTGACCAAAGTTTCTCACTTTATTGAAT
7 192 316 AAEL009582-RA 13150 AAEL009582-RA 13150 FALSE unmapped TATAATGTAACGCATTTTTAGGGGTAAGATGTTTTAAGTGTTCTATATGATTAAGTA
8 192 314 AAEL013010-RA 12927 AAEL013010-RA 12927 FALSE unmapped ATAGAAAATATTTATAGTGCAAATAAAATAGGTAAGGAATCCTGCTTCGAGCGAATC
9 192 312 AAEL001811-RA 7979 AAEL001811-RA 7979 FALSE unmapped GAAGGATACGCTGATGAAGAAATATTAAACCGCTGTTGGTTCTTAAAGAATACTAAA
10 192 310 AAEL014867-RA 34529 AAEL014867-RA 34529 FALSE unmapped AACCAAATTCCTTTCCAACATGCAGTGCAGTATATAGATGTAGATGAGTAAATACAA
11 192 308 AAEL006752-RA 4604 AAEL006752-RA 4604 FALSE unmapped CATTTTACTATTTAAAACTAAATACTATACGCTGTAACCAGTTGAAACGCAAGTTAG
12 192 306 AAEL006558-RA 29337 AAEL006558-RA 29337 FALSE unmapped GATCGACCGAGACTATTTCTACGAGATAGGTTCGTATGATGAAGGCATGGACATCTG
13 192 304 AAEL006211-RA 9492 AAEL006211-RA 9492 FALSE unmapped TATAACGAACCTTACCTACGCAGAACCACATCTCGACATATCTAACCTTGAGGTGTT
14 192 302 AAEL004954-RA 7208 AAEL004954-RA 7208 FALSE unmapped ATAACATCAAGTTCGTGGACAATGTGCTGTACTCGAAGGACTTTAATGGGGCTGATC
15 192 300 AAEL011550-RA 26100 AAEL011550-RA 26100 FALSE unmapped TTTCAGCATCAATGGACAGAAAACTATTGTAGCTTTACAGGAAACTGATCAAGTGAT
16 192 298 AAEL011273-RA 13075 AAEL011273-RA 13075 FALSE unmapped AACCTGAGTTGTATTATTTGCGTTTACCTAAAGACATCAAAGATTATAGAGTAATAT
17 192 296 AAEL006949-RA 38259 AAEL006949-RA 38259 FALSE unmapped CTAATTCAGACACTACCATTACCACGGAGATTGCTAGACTACCTTAATTATAAGAAT
18 192 294 AAEL010286-RA 38721 AAEL010286-RA 38721 FALSE unmapped GATTCCCACCACAACGAGGCACTCAGATCGATGACTCCAAAGAAGTTCAAGTTAAAA
19 192 292 AAEL002124-RA 39828 AAEL002124-RA 39828 FALSE unmapped GTAGTGAAGATGGAAATGCACCCCAGCTATGATAAGAAAGATGGCCACTCCGATTTG
20 192 290 AAEL008564-RA 36091 AAEL008564-RA 36091 FALSE unmapped CCAAATTATTTTATCAAATAATCCCCAGGTTCAATTATAATATGAAAATCCTTAAAA

Total number of rows: 62976

Table truncated, full table size 7615 Kbytes.




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