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Platform GPL24139 Query DataSets for GPL24139
Status Public on Apr 06, 2018
Title [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [noncoder version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Re-annotation of exon array probes can be used to profile expressions of tens of thousands of long non-coding RNAs (lncRNAs).
Chromosome coordinates based on mm9.
 
Web link http://noncoder.mpi-bn.mpg.de
https://www.ncbi.nlm.nih.gov/pubmed/23012263
Submission date Oct 18, 2017
Last update date Apr 08, 2018
Contact name Shizuka Uchida
E-mail(s) heart.lncrna@gmail.com, suc@dcm.aau.dk
Organization name Aalborg University
Department Department of Clinical Medicine
Lab Center for RNA Medicine
Street address Frederikskaj 10B, 2. (building C)
City Copenhagen SV
ZIP/Postal code DK-2450
Country Denmark
 
Samples (4) GSM2818542, GSM2818543, GSM2818544, GSM2818545
Series (2)
GSE69530 A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1
GSE105118 Screening for lincRNAs in C2C12 cells [array_differentiation]
Relations
Alternative to GPL6096 (official)

Data table header descriptions
ID Transcript Cluster ID
NONCODE ID
GB_LIST GenBank Accessions
Description
Type
Region
CHROMOSOME
RANGE_START
RANGE_STOP
Strand
SPOT_ID

Data table
ID NONCODE ID GB_LIST Description Type Region CHROMOSOME RANGE_START RANGE_STOP Strand SPOT_ID
8024540 n284151 AK137830 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130022K07 product:unclassifiable, full insert sequence. mRNAlike lncRNA intergenic chr11 116141411 116145674 - 8024540
8014661 n296220,n296526 AK018949, AK006765 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700110E08 product:unclassifiable, full insert sequence.,Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700052E02 product:unclassifiable, full insert sequence. mRNAlike lncRNA sense chr17 78973267 78976911 + 8014661
8000212 n283319,n421715,n421716,n277657 AK045521, AK038418 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230208H21 product:unclassifiable, full insert sequence.,Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230006K03 product:unclassifiable, full insert sequence., mRNAlike lncRNA,lncRNA sense, intergenic chr7 68217637 68456607 - 8000212
8014424 n284712 AK036642 Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830144P05 product:unclassifiable, full insert sequence. mRNAlike lncRNA sense chr19 40668037 40671942 - 8014424
8024708 n284892 AK036307 Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630055E22 product:expressed sequence BB075781, full insert sequence. mRNAlike lncRNA sense chr17 70871416 70945085 + 8024708
8024035 n269179 AK086553 Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930036K11 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr11 117535151 117536115 + 8024035
8029534 n269190 AK142874 Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930036E12 product:unclassifiable, full insert sequence. mRNAlike lncRNA intergenic chr19 29810269 29812581 - 8029534
8016435 n271969 AK051693 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130065P14 product:unclassifiable, full insert sequence. mRNAlike lncRNA intergenic chr4 18050134 18052524 + 8016435
8013295 n296700 AK006451 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700028D13 product:unclassifiable, full insert sequence. mRNAlike lncRNA intergenic chr5 112635825 112639018 + 8013295
8022654 n268335,n293369 AK053405, AK029413 Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130014H10 product:unclassifiable, full insert sequence.,Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833431O04 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr15 8614965 8617235 - 8022654
8005370 n289046 AK078256 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430544H11 product:unclassifiable, full insert sequence. mRNAlike lncRNA intergenic chr6 122760008 122761115 - 8005370
8023141 n283160 AK038591 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230048H23 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr2 163108362 163111815 + 8023141
8008496 n270410,n269098 AK086635, AK052608 Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930043D14 product:unclassifiable, full insert sequence.,Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630004D15 product:unclassifiable, full insert sequence. mRNAlike lncRNA extension, intergenic chr5 99310681 99313063 + 8008496
8020673 n280494 AK041796 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630038L12 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr12 32502740 32505757 + 8020673
8027886 n273601 AK049614 Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530004H17 product:unclassifiable, full insert sequence. mRNAlike lncRNA sense chr2 31062151 31065582 + 8027886
8026486 n288744 AK032749 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720427M09 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr16 38635553 38636750 - 8026486
8025410 n292548 AK076820 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930485C04 product:mutS homolog 4 (E. coli), full insert sequence. mRNAlike lncRNA sense chr3 153520328 153528045 - 8025410
8022495 n264765 AK090214 Mus musculus 16 days neonate male diencephalon cDNA, RIKEN full-length enriched library, clone:G630019D08 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr6 85172312 85174807 - 8022495
8000733 n296135 AK007258 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700123M18 product:sialophorin, pseudogene, full insert sequence. mRNAlike lncRNA intergenic chr15 90721826 90728907 - 8000733
8016273 n265212 AK157654 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830229O20 product:unclassifiable, full insert sequence. mRNAlike lncRNA intronic chr3 64928718 64932277 + 8016273

Total number of rows: 24670

Table truncated, full table size 6090 Kbytes.




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Supplementary file Size Download File type/resource
GPL24139_MoEx-ncRNA.mps.gz 327.6 Kb (ftp)(http) MPS
GPL24139_MoEx-ncRNA.pgf.gz 11.0 Mb (ftp)(http) PGF
GPL24139_MoEx-ncRNA_probesets.xls.gz 3.4 Mb (ftp)(http) XLS
GPL24139_MoEx-ncRNA_transcriptscluster.xls.gz 2.0 Mb (ftp)(http) XLS

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