NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL33783 Query DataSets for GPL33783
Status Public on Nov 08, 2023
Title RT² Profiler PCR Array Swine IFN response (custom)
Technology type RT-PCR
Distribution virtual
Organism Sus scrofa
Manufacturer Qiagen
Manufacture protocol See manufacturer's website
Catalog number CLAS34508
 
Description Customized Swine Type I Interferon Response PCR array designed to study the expression of 89 porcine genes involved in the IFN response
Qiagen RT² Profiler panel of PCR assays.
 
Submission date Sep 22, 2023
Last update date Nov 09, 2023
Contact name Virginie Doceul
E-mail(s) virginie.doceul@vet-alfort.fr
Organization name UMR VIROLOGIE INRAE-ANSES-ENVA
Street address 7 avenue du Général de Gaulle
City Maisons-Alfort
ZIP/Postal code 94700
Country France
 
Samples (8) GSM7797079, GSM7797080, GSM7797081, GSM7797082, GSM7797083, GSM7797084 
Series (2)
GSE243862 Real-time quantitative PCR analysis of liver tissue from pigs infected experimentally with hepatitis E virus (HEV) [pig liver]
GSE243864 Real-time quantitative PCR analysis of liver tissue from pigs infected experimentally with hepatitis E virus (HEV)

Data table header descriptions
ID
Unigene UniGene cluster ID
GB_ACC GenBank Accession number
Symbol Gene symbol
Description Gene description
Gname Gene name
SPOT_ID

Data table
ID Unigene GB_ACC Symbol Description Gname SPOT_ID
A01 Ssc.57541 NM_214084 VEGFA Vascular endothelial growth factor A VEGF
A02 Ssc.5096 NM_001114670 TYK2 Tyrosine kinase 2 -
A03 Ssc.221 NM_214061 MX1 Myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) Mx/MxA
A04 Ssc.97588 NM_001097416 MX2 Myxovirus (influenza virus) resistance 2 (mouse) -
A05 Ssc.56942 XM_013996900 IFI16 Interferon-activable protein 204-like -
A06 Ssc.62 NM_214399 IL6 Interleukin 6 (interferon, beta 2) -
A07 Ssc.8833 NM_214390 IL15 Interleukin 15 IL-15
A08 Ssc.148 NM_214041 IL10 Interleukin 10 CSIF/IL-10
A09 Ssc.53751 NM_001131046 IFI30 Interferon, gamma-inducible protein 30 GILT
A10 Ssc.53693 XM_003124230 IFITM1 Interferon induced transmembrane protein 1 (9-27) -
A11 Ssc.39753 NM_001246214 IFITM2 Interferon induced transmembrane protein 2 (1-8D) -
A12 Ssc.39753 NM_001201382 IFITM3 Interferon induced transmembrane protein 3 -
B01 Ssc.11381 NM_213772 IFNAR1 Interferon (alpha, beta and omega) receptor 1 IFN-R-1
B02 Ssc.49478 NM_001097429 MAVS Mitochondrial antiviral signaling protein VISA
B03 Ssc.3607 NM_001204775 IFNAR2 Interferon (alpha, beta and omega) receptor 2 -
B04 Ssc.19139 NM_001100194 IFIH1 Interferon induced with helicase C domain 1 MDA5
B05 Ssc.48368 NM_001244363 IFIT1 Interferon-induced protein with tetratricopeptide repeats 1 -
B06 Ssc.34955 XM_001928671 IFIT2 Interferon-induced protein with tetratricopeptide repeats 2 G10P2/GARG-39/IFI-54/IFI-54K/IFI54/IFIT-2/ISG-54K/ISG54/cig42
B07 Ssc.45495 NM_001204395 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 -
B08 Ssc.69826 NM_001105310 IFNE Interferon epsilon 1 IFN-epsilon/IFNE1

Total number of rows: 93

Table truncated, full table size 6 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap