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Platform GPL34013 Query DataSets for GPL34013
Status Public on Dec 18, 2023
Title Agilent-085948 MECP2_V3 G4125A
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16085948 or 2585948

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Dec 14, 2023
Last update date Dec 19, 2023
Contact name Christopher Grochowski
E-mail(s) Christopher.Grochowski@bcm.edu
Organization name Baylor College of Medicine
Department Molecular and Human Genetics
Street address 1 Baylor Plaza
City Houston
State/province Texas
ZIP/Postal code 77006
Country USA
 
Samples (1) GSM7979338
Series (1)
GSE250451 Break-induced replication underlies formation of inverted triplications and generates unexpected diversity in haplotype structures

Data table header descriptions
ID
COL
ROW
SPOT_ID
SPOT_ID
CONTROL_TYPE
GB_ACC
ENSEMBLE_ID
ORF
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION

Data table
ID COL ROW SPOT_ID SPOT_ID CONTROL_TYPE GB_ACC ENSEMBLE_ID ORF GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 532 340 HsCGHBrightCorner CONTROL pos
2 532 338 DarkCorner2 CONTROL pos
3 532 336 DarkCorner2 CONTROL pos
4 532 334 DarkCorner2 CONTROL pos
5 532 332 DarkCorner2 CONTROL pos
6 532 330 DarkCorner2 CONTROL pos
7 532 328 DarkCorner2 CONTROL pos
8 532 326 DarkCorner2 CONTROL pos
9 532 324 DarkCorner2 CONTROL pos
10 532 322 DarkCorner2 CONTROL pos
11 532 320 DarkCorner2 CONTROL pos
12 532 318 DarkCorner2 CONTROL pos
13 532 316 DarkCorner2 CONTROL pos
14 532 314 DarkCorner2 CONTROL pos
15 532 312 DarkCorner2 CONTROL pos
16 532 310 DarkCorner2 CONTROL pos
17 532 308 DarkCorner2 CONTROL pos
18 532 306 DarkCorner2 CONTROL pos
19 532 304 DarkCorner2 CONTROL pos
20 532 302 DarkCorner2 CONTROL pos

Total number of rows: 172068

Table truncated, full table size 12261 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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