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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 29, 2007 |
| Title |
[Hs35b_P02R] Affymetrix Human Tiling 2.0R Set, Array 2 |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site
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| Catalog number |
900772 |
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
The GeneChip® Human Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions.
Sequences used in the design of the Human Tiling 2.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. The Human Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900772), or individual arrays from the set may be purchased separately. The GeneChip® Human Promoter 1.0R Array is a subset of the Human Tiling 2.0R Tiling Array Set, and the content was chosen specifically to analyze protein/DNA interactions within promoter regions.
Probes are tiled at an average resolution of 35 base pair, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence.
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/products/arrays/specific/human_tiling_2.affx
http://www.affymetrix.com/support/technical/libraryfileupdatesmain.affx
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| Submission date |
Mar 01, 2007 |
| Last update date |
Jun 03, 2009 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (407)
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GSM172647, GSM172656, GSM172664, GSM172673, GSM172681, GSM172690
GSM172698, GSM172707, GSM172719, GSM172724, GSM178873, GSM178877, GSM178882, GSM178885, GSM178898, GSM178914, GSM178924, GSM178930, GSM178931, GSM178939, GSM178958, GSM178972, GSM178982, GSM178998, GSM178999, GSM179018, GSM179029, GSM179032, GSM179042, GSM179044, GSM179053, GSM179054, GSM179055, GSM179063, GSM210568, GSM210575, GSM210582, GSM210589, GSM210596, GSM210603, GSM210610, GSM210617, GSM210624, GSM210631, GSM210638, GSM210645, GSM210652, GSM210659, GSM210666, GSM210673, GSM210680, GSM272774, GSM272781, GSM272788, GSM272795, GSM272802, GSM272809, GSM272816, GSM272823, GSM272830, GSM285256, GSM285257, GSM285258, GSM285286, GSM285287, GSM285288, GSM285289, GSM285290, GSM285291, GSM285292, GSM285293, GSM285294, GSM285295, GSM285296, GSM285297, GSM285298, GSM314692, GSM314693, GSM314694, GSM314695, GSM314696, GSM314697, GSM314698, GSM314699, GSM314700, GSM314701, GSM314702, GSM314703, GSM314704, GSM314705, GSM314706, GSM314707, GSM314708, GSM314709, GSM314710, GSM314711, GSM314712, GSM380590, GSM380597, GSM380604, GSM380611, GSM380618, GSM380625, GSM380632, GSM380639, GSM380646, GSM380653, GSM380660, GSM380667, GSM380674, GSM380681, GSM380688, GSM380695, GSM380702, GSM380709, GSM381562, GSM393170, GSM393177, GSM410556, GSM410563, GSM463372, GSM478709, GSM478716, GSM478723, GSM478730, GSM478737, GSM478743, GSM478750, GSM478757, GSM480255, GSM480262, GSM480269, GSM480883, GSM524825, GSM548831, GSM548838, GSM548845, GSM560219, GSM560220, GSM560221, GSM560246, GSM560247, GSM560248, GSM593034, GSM593041, GSM593048, GSM593055, GSM640345, GSM640352, GSM640359, GSM640366, GSM640373, GSM646584, GSM646591, GSM646598, GSM739989, GSM739996, GSM754844, GSM754851, GSM754858, GSM754865, GSM863509, GSM863510, GSM863511, GSM863512, GSM863513, GSM863514, GSM863515, GSM863516, GSM863517, GSM863518, GSM863519, GSM863520, GSM863521, GSM863522, GSM863523, GSM863524, GSM863525, GSM863526, GSM863527, GSM863528, GSM863529, GSM863530, GSM863531, GSM863532, GSM863533, GSM863534, GSM863535, GSM863536, GSM863537, GSM863538, GSM1029812, GSM1029819, GSM1029826, GSM1029833, GSM1029840, GSM1029847, GSM1029854, GSM1029861, GSM1029868, GSM1029875, GSM1029882, GSM1029889, GSM1029896, GSM1029903, GSM1029910, GSM1029917, GSM1029924, GSM1029931, GSM1029938, GSM1029945, GSM1029952, GSM1029959, GSM1029966, GSM1029973, GSM1029980, GSM1029987, GSM1029994, GSM1030001, GSM1030008, GSM1030015, GSM1030022, GSM1030029, GSM1030036, GSM1030043, GSM1045820, GSM1045827, GSM1045834, GSM1045841, GSM1045848, GSM1045855, GSM1631922, GSM1631923, GSM1631936, GSM1631937, GSM1631949, GSM1631950, GSM1631963, GSM1631964, GSM1631977, GSM1631978, GSM1631991, GSM1631992, GSM1632005, GSM1632006, GSM1632019, GSM1632020, GSM1632033, GSM1632034, GSM1632047, GSM1632048, GSM1632061, GSM1632062, GSM1632075, GSM1632076, GSM1632089, GSM1632090, GSM1632103, GSM1632104, GSM1632117, GSM1632118, GSM1632131, GSM1632132, GSM1714471, GSM1714472, GSM1714473, GSM1714474, GSM1714475, GSM1714476, GSM1714477, GSM1714478, GSM1714479, GSM1714480, GSM1714481, GSM1714482, GSM1714483, GSM1714484, GSM1714485, GSM1714486, GSM1714487, GSM1714488, GSM1714489, GSM1714490, GSM1714491, GSM1714492, GSM1714493, GSM1714494, GSM1714495, GSM1714496, GSM1714497, GSM1714498, GSM1714499, GSM1714500, GSM1714501, GSM1714502, GSM1714503, GSM1714504, GSM1714505, GSM1714506, GSM1714507, GSM1714508, GSM1714509, GSM1714510, GSM1714511, GSM1714512, GSM1714513, GSM1714514, GSM1714515, GSM1714516, GSM1714517, GSM1714518, GSM1714519, GSM1714520, GSM1714521, GSM1714522, GSM1714523, GSM1714524, GSM1714525, GSM1714526, GSM1714527, GSM1714528, GSM1714529, GSM1714530, GSM1714531, GSM1714532, GSM1714533, GSM1714534, GSM1714535, GSM1714536, GSM1714537, GSM1714538, GSM1714539, GSM1714540, GSM1714541, GSM1714542, GSM1714543, GSM1714544, GSM1714545, GSM1714546, GSM1714547, GSM1714548, GSM1714549, GSM1714550, GSM1714551, GSM1714552, GSM1714553, GSM1714554, GSM1714555, GSM1714556, GSM1714557, GSM1714558, GSM1714559, GSM1714560, GSM1714561, GSM1714562, GSM1714563, GSM1714564, GSM1714565, GSM1714566, GSM1714567, GSM1714568, GSM1714569, GSM1714570, GSM1714571, GSM1714572, GSM1714573, GSM1714574, GSM1714575, GSM1714576, GSM1714577, GSM1714578, GSM1714579, GSM1714580, GSM1714581, GSM1714582, GSM1714583, GSM1714584, GSM1714585, GSM1714586, GSM1714587, GSM1714588, GSM1714589, GSM1714590, GSM1714591, GSM1714592, GSM1714593, GSM1714594, GSM1714595, GSM1714596, GSM1714597, GSM1714598, GSM1714599, GSM1714600, GSM1714601, GSM1714602, GSM1714603, GSM1714604, GSM1714605, GSM1714606, GSM1714607, GSM1714608, GSM1714609, GSM1714610, GSM1714611, GSM1714612, GSM1714613, GSM1714614
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| Series (30)
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| GSE7168 |
DNaseI sensitivity/hypersensitivity Part I |
| GSE7411 |
DNaseI sensitivity/hypersensitivity Part II |
| GSE8222 |
DNaseI sensitivity/hypersensitivity |
| GSE8489 |
ChIP-chip analysis of transcription factors GABP, SRF, TAF, and NRSF on Affymetrix whole genome tiling arrays 2.0R |
| GSE10800 |
Genome-wide Binding Site Mapping of Estrogen Receptor alpha and c-MYC in Breast Cancer Cells |
| GSE11298 |
Tissue/Cell DNaseI sensitivity/hypersensitivity screening II |
| GSE12525 |
5-methylcytosine ChIP-on-Chip (MeDIP) of sporadic amyotrophic lateral sclerosis and control human brains |
| GSE15220 |
Genome-wide analysis of differential methylation and gene expression in a testicular cancer cell line |
| GSE15244 |
Genome-wide Binding Site Mapping of Retinoic Acid Receptors and Coregulators in Breast Cancer Cells |
| GSE15704 |
ChIP-on-Chip data from Rh30 cells +/- rapamycin treatment |
| GSE15719 |
p73 activity and rapamycin treatment: ChIP-on-Chip and gene expression profiling studies |
| GSE16347 |
Genome-wide HIF-1 binding sites in HepG2 cells |
| GSE18650 |
Whole genome mapping of p73 binding sites in ME180 human cervical carcinoma cells |
| GSE19289 |
Most “dark matter” transcripts are associated with known genes |
| GSE19328 |
Coativator Function Defines the Active Estrogen Receptor Alpha Cistrome |
| GSE20995 |
Genome wide FOXP3 binding sites in human cord blood derived CD4+CD25+ natural T regulatory cells (nTreg) |
| GSE22076 |
The Androgen Receptor Modulates Expression of Genes with Critical Roles in Muscle Development and Function |
| GSE22572 |
TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions |
| GSE24090 |
Genome-wide methylation analysis in HPV(-) and HPV(+) squamous cell carcinoma cell lines |
| GSE24091 |
Expression and methylation analyses of HPV(-) and HPV(+) squamous cell carcinoma cell lines |
| GSE26081 |
Growth Factor Stimulation Induces a Distinct ERα Cistrome Underlying Breast Cancer Endocrine Resistance |
| GSE26329 |
MYBL2/CREB1-Dependent Distinct FoxA1 Cistrome Directs G1/S Cell Cycle Progression in Androgen-Independent Prostate Cancer |
| GSE29876 |
Assessment of palindromes as platforms for DNA amplification in breast cancer |
| GSE30434 |
ChIP-chip for histone modifications in hESCs and differentiated hESCs |
| GSE35204 |
Methylome-wide comparison of human genomic DNA extracted from whole blood and from EBV-transformed lymphocyte cell lines |
| GSE41995 |
ChIP-chip of 38 nuclear receptors and NR co-factors in breast cancer cell line MCF7 |
| GSE42617 |
ChIP-chip of 6 chromatin marks (FAIRE, H3K4me1, H3K4me3, H3K27me3, H3R17me2, H3AZAce) in breast cancer cell line MCF7 |
| GSE66784 |
Genome-wide DNA methylation analysis on testicular embryonal carcinoma |
| GSE69972 |
Chromosome-wide DNA unmethylome profiling examining human chromosomes 2, 9, 19 and mouse chromosomes 1, 9, 19 |
| GSE69979 |
Epigenetics of lactose intolerance and lactase persistence |
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| Supplementary data files not provided |
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