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Status
Public on Oct 01, 2008
Title
Tetrahymena thermophila genome-wide oligonucleotide microarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Tetrahymena thermophila Manufacturer
NimbleGen
Manufacture protocol
http://www.nimblegen.com/products/exp/index.html
Description
The complete array includes 384999 60-mer oligonucleotides.http://www.tigr.org/tdb/e2k1/ttg/ ) including predicted protein-coding genes, non-protein-coding RNA and tRNA genes were used to construct high-density T. thermophila genome-wide oligonucleotide DNA microarrays. For each of the sequences, 13 or 14 unique 60-mer oligonucleotide probes were designed by NimbleGen Systems
Contributor(s)
Miao W , Bowen J , Gorovsky M Submission date
Apr 21, 2008
Last update date
Oct 01, 2008
Contact name
Martin Gorovsky
E-mail(s)
goro@mail.rochester.edu Phone
585 275-6988
Fax
585 275-2070
Organization name
University of Rochester
Department
Department of Biology
Street address
Hutchison Hall 432
City
Rochester
State/province
NY
ZIP/Postal code
14627
Country
USA
Samples (98)
GSM283687 , GSM283690 , GSM283691 , GSM284355 , GSM284357 , GSM284360
GSM284362 ,
GSM284363 ,
GSM284364 ,
GSM285363 ,
GSM285542 ,
GSM285543 ,
GSM285544 ,
GSM285545 ,
GSM285546 ,
GSM285547 ,
GSM285554 ,
GSM285555 ,
GSM285556 ,
GSM285557 ,
GSM285558 ,
GSM285559 ,
GSM285560 ,
GSM285561 ,
GSM285562 ,
GSM285563 ,
GSM285564 ,
GSM285565 ,
GSM285566 ,
GSM285567 ,
GSM285570 ,
GSM285572 ,
GSM285574 ,
GSM285575 ,
GSM285576 ,
GSM285578 ,
GSM285579 ,
GSM285580 ,
GSM285582 ,
GSM285583 ,
GSM285586 ,
GSM285587 ,
GSM285588 ,
GSM285589 ,
GSM285590 ,
GSM285591 ,
GSM285592 ,
GSM285593 ,
GSM285595 ,
GSM285596 ,
GSM465503 ,
GSM465504 ,
GSM465505 ,
GSM465506 ,
GSM465507 ,
GSM465508 ,
GSM647244 ,
GSM647245 ,
GSM647651 ,
GSM647652 ,
GSM647653 ,
GSM647654 ,
GSM651899 ,
GSM651901 ,
GSM651902 ,
GSM651903 ,
GSM651904 ,
GSM656230 ,
GSM656231 ,
GSM656232 ,
GSM656233 ,
GSM656234 ,
GSM656235 ,
GSM656236 ,
GSM656237 ,
GSM656238 ,
GSM656239 ,
GSM656240 ,
GSM1095300 ,
GSM1095301 ,
GSM1095302 ,
GSM1095303 ,
GSM1095304 ,
GSM1095305 ,
GSM1095306 ,
GSM1095307 ,
GSM1095308 ,
GSM1095309 ,
GSM1095310 ,
GSM1095311 ,
GSM1301858 ,
GSM1301859 ,
GSM1301860 ,
GSM1301861 ,
GSM1301862 ,
GSM1301863 ,
GSM1301864 ,
GSM1301865 Series (8)
GSE11300 Genome-Wide Microarray Analysis Reveals Massive Changes in Gene Expression During Conjugation in Tetrahymena thermophila
GSE18743 Genome-Wide Microarray Analysis of Histone H2B Ubiquitylation mutant strains of Tetrahymena thermophila
GSE26384 Genome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila
GSE26385 Genome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila
GSE26515 Five genome-wide microarrays were used to indentify gene expression in exposure to Tributyltin, Dichlorodiphenyltrichloroethane and 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin.
GSE26650 Genome-Wide gene expression of Tetrahymena thermophila conjugation
GSE44990 Expression changes in Tetrahymena thermophila TRX1 and EZL2 gene knockouts and after hydroxyurea (HU) treatment
GSE53836 Gene expression of Tetrahymena thermophila SB210 under the arsenic exposure
Data table header descriptions ID SEQ_ID = The NimbleGen sequence identifier.
GENE_ID Gene ID in Tetrahymena Genome Database (http://www.ciliate.org/genomedata.shtml)
SOURCE_DB source of database (http://www.tigr.org/tdb/e2k1/ttg/)
ORF locus tag
SPOT_ID non-protein-coding RNA and tRNA genes
Data table ID GENE_ID SOURCE_DB ORF SPOT_ID TETRA00S0000001
1.m00557 TTHERM_00000010
TTA1_08302006.cdna
TTHERM_00000010 TETRA00S0000002
1.m00558 TTHERM_00000020
TTA1_08302006.cdna
TTHERM_00000020 TETRA00S0000003
1.m00559 TTHERM_00000030
TTA1_08302006.cdna
TTHERM_00000030 TETRA00S0000004
1.m00560 TTHERM_00000040
TTA1_08302006.cdna
TTHERM_00000040 TETRA00S0000005
1.m00561 TTHERM_00000050
TTA1_08302006.cdna
TTHERM_00000050 TETRA00S0000006
1.m00562 TTHERM_00000060
TTA1_08302006.cdna
TTHERM_00000060 TETRA00S0000007
1.m00563 TTHERM_00000070
TTA1_08302006.cdna
TTHERM_00000070 TETRA00S0000009
1.m00565 TTHERM_00001080
TTA1_08302006.cdna
TTHERM_00001080 TETRA00S0000010
1.m00566 TTHERM_00001090
TTA1_08302006.cdna
TTHERM_00001090 TETRA00S0000011
1.m00567 TTHERM_00001120
TTA1_08302006.cdna
TTHERM_00001120 TETRA00S0000012
1.m00568 TTHERM_00001130
TTA1_08302006.cdna
TTHERM_00001130 TETRA00S0000013
1.m00569 TTHERM_00001140
TTA1_08302006.cdna
TTHERM_00001140 TETRA00S0000014
1.m00570 TTHERM_00001150
TTA1_08302006.cdna
TTHERM_00001150 TETRA00S0000015
1.m00571 TTHERM_00001160
TTA1_08302006.cdna
TTHERM_00001160 TETRA00S0000016
1.m00572 TTHERM_00001170
TTA1_08302006.cdna
TTHERM_00001170 TETRA00S0000017
1.m00573 TTHERM_00001180
TTA1_08302006.cdna
TTHERM_00001180 TETRA00S0000018
1.m00574 TTHERM_00001190
TTA1_08302006.cdna
TTHERM_00001190 TETRA00S0000019
1.m00575 TTHERM_00001200
TTA1_08302006.cdna
TTHERM_00001200 TETRA00S0000020
1.m00576 TTHERM_00001210
TTA1_08302006.cdna
TTHERM_00001210 TETRA00S0000021
1.m00577 TTHERM_00001220
TTA1_08302006.cdna
TTHERM_00001220
28064 2172 Kbytes .Supplementary file Size Download File type/resource GPL6759.ndf.gz
21.7 Mb
(ftp) (http) NDF
GPL6759.ngd.gz
318.6 Kb
(ftp) (http) NGD
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