GEO help: Mouse over screen elements for information.
Status
Public on Dec 01, 2008
Title
Mouse Genome 430 2.0 Array [Mouse4302_Mm_ENSG (v11.0.1) CDF]
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Affymetrix
Manufacture protocol
This is identical to GPL1261 but a custom cdf environment was used to extract data. We used custom chip definition files (CDF) based on Ensembl gene annotation from build 46 rather than Affymetrix annotation (Dai et al., PMID: 16284200).
Description
Probes that were estimated to have a mismatch in their sequence between Mus musculus and Mus spretus were removed from the CDF environment. The details of the procedure are described in the paper. For some probesets, all probes were masked, and they are therefore not represented in the CDF file.
Submission date
May 21, 2008
Last update date
Mar 09, 2009
Contact name
Mehmet Somel
E-mail(s)
somel@eva.mpg.de Phone
+49-(0)341-3550-530
Fax
+49-(0)341-3550-555
Organization name
Max Planck Institute for Evolutionary Anthropology
Department
Evolutionary Genetics
Street address
Deutscher Platz 6
City
Leipzig
ZIP/Postal code
D-04103
Country
Germany
Samples (30)
GSM290519 , GSM290520 , GSM290521 , GSM290522 , GSM290523 , GSM290524
GSM290525 ,
GSM290526 ,
GSM290527 ,
GSM290528 ,
GSM290529 ,
GSM290530 ,
GSM290531 ,
GSM290532 ,
GSM290533 ,
GSM290534 ,
GSM290535 ,
GSM290536 ,
GSM441173 ,
GSM441174 ,
GSM441175 ,
GSM441176 ,
GSM441177 ,
GSM441178 ,
GSM441179 ,
GSM441180 ,
GSM441181 ,
GSM441182 ,
GSM441183 ,
GSM441184 Series (2)
GSE11528 Gene expression data from mouse postnatal brain development
GSE17684 Widespread over-expression of the X chromosome in sterile F1 hybrid mice
Relations Alternative to
GPL1261 (Alternative CDF [official])
Data table header descriptions ID ORF Gene identifier
Description
Data table ID ORF Description ENSMUSG00000000001_at
ENSMUSG00000000001 Guanine nucleotide-binding protein G(k) subunit alpha (G(i) alpha-3). [Source:Uniprot/SWISSPROT;Acc:Q9DC51]
ENSMUSG00000000003_at
ENSMUSG00000000003 Probasin precursor (PB). [Source:Uniprot/SWISSPROT;Acc:O08976]
ENSMUSG00000000028_at
ENSMUSG00000000028 CDC45-related protein (PORC-PI-1). [Source:Uniprot/SWISSPROT;Acc:Q9Z1X9]
ENSMUSG00000000031_at
ENSMUSG00000000031 M.musculus H19 mRNA (H19 protein). [Source:Uniprot/SPTREMBL;Acc:Q61639]
ENSMUSG00000000037_at
ENSMUSG00000000037 sex comb on midleg-like 2 [Source:RefSeq_peptide;Acc:NP_573457]
ENSMUSG00000000049_at
ENSMUSG00000000049 Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I) (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) (Activated protein C- binding protein) (APC inhibitor). [Source:Uniprot/SWISSPROT;Acc:Q01339]
ENSMUSG00000000056_at
ENSMUSG00000000056 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7]
ENSMUSG00000000058_at
ENSMUSG00000000058 Caveolin-2. [Source:Uniprot/SWISSPROT;Acc:Q9WVC3]
ENSMUSG00000000078_at
ENSMUSG00000000078 Krueppel-like factor 6 (Core promoter element-binding protein). [Source:Uniprot/SWISSPROT;Acc:O08584]
ENSMUSG00000000085_at
ENSMUSG00000000085 Polycomb protein SCMH1 (Sex comb on midleg homolog 1). [Source:Uniprot/SWISSPROT;Acc:Q8K214]
ENSMUSG00000000088_at
ENSMUSG00000000088 Cytochrome c oxidase subunit 5A, mitochondrial precursor (Cytochrome c oxidase polypeptide Va). [Source:Uniprot/SWISSPROT;Acc:P12787]
ENSMUSG00000000093_at
ENSMUSG00000000093 T-box transcription factor TBX2 (T-box protein 2). [Source:Uniprot/SWISSPROT;Acc:Q60707]
ENSMUSG00000000094_at
ENSMUSG00000000094 T-box transcription factor TBX4 (T-box protein 4). [Source:Uniprot/SWISSPROT;Acc:P70325]
ENSMUSG00000000103_at
ENSMUSG00000000103 Zinc finger Y-chromosomal protein 2. [Source:Uniprot/SWISSPROT;Acc:P20662]
ENSMUSG00000000120_at
ENSMUSG00000000120 Tumor necrosis factor receptor superfamily member 16 precursor (Low- affinity nerve growth factor receptor) (NGF receptor) (Low affinity neurotrophin receptor p75NTR). [Source:Uniprot/SWISSPROT;Acc:Q9Z0W1]
ENSMUSG00000000125_at
ENSMUSG00000000125 Proto-oncogene protein Wnt-3 precursor. [Source:Uniprot/SWISSPROT;Acc:P17553]
ENSMUSG00000000126_at
ENSMUSG00000000126 Protein Wnt-9a precursor (Wnt-14). [Source:Uniprot/SWISSPROT;Acc:Q8R5M2]
ENSMUSG00000000127_at
ENSMUSG00000000127 Proto-oncogene tyrosine-protein kinase FER (EC 2.7.10.2) (p94-FER) (c- FER). [Source:Uniprot/SWISSPROT;Acc:P70451]
ENSMUSG00000000131_at
ENSMUSG00000000131 Exportin-6 (Exp6) (Ran-binding protein 20). [Source:Uniprot/SWISSPROT;Acc:Q924Z6]
ENSMUSG00000000134_at
ENSMUSG00000000134 Transcription factor E3. [Source:Uniprot/SWISSPROT;Acc:Q64092]
16317 2503 Kbytes .Supplementary file Size Download File type/resource GPL6886_Mouse4302_Mm_ENSG.cdf.gz
6.3 Mb
(ftp) (http) CDF
GPL6886_Mouse4302_Mm_ENSG_desc.txt.gz
537.4 Kb
(ftp) (http) TXT
GPL6886_Mouse4302_Mm_ENSG_mapping.txt.gz
2.0 Mb
(ftp) (http) TXT
GPL6886_Mouse4302_Mm_ENSG_probe_tab.txt.gz
3.3 Mb
(ftp) (http) TXT
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