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Platform GPL7144 Query DataSets for GPL7144
Status Public on Aug 07, 2008
Title NuGO array (human) NuGO_Hs1a520180 [CDF: Hs_ENTREZG_10]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol This array is identical to GPL7020 but a custom, remapped CDF environment is used to extract data. This is version 10 of the remapped CDF (see supplementary file linked below). The CDF for various platforms can be found at the Web link below.


 
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source.
For the CDF file based on Entrez Gene:
A probe must hit only one genomic location;
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon.
For detailed description please see the paper and website.
 
Web link http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp
Citation(s) 16284200
Submission date Aug 06, 2008
Last update date Oct 24, 2011
Contact name Guido Hooiveld
E-mail(s) guido.hooiveld@wur.nl
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
 
Samples (218) GSM310640, GSM310641, GSM310642, GSM310643, GSM310644, GSM310645 
Series (4)
GSE12375 Fish oil supplementation induces anti-atherogenic gene expression profiles in human blood mononuclear cells
GSE13466 Acute effects of different dietary fatty acids on the gene expression profiles of PBMCs of healthy young men
GSE161719 Relationship between insulin sensitivity and gene expression in human skeletal muscle (Study A)
Relations
Alternative to GPL7020 (Alternative CDF [official])

Data table header descriptions
ID
ENTREZ_GENE_ID EntrezGene ID
ORF ORF Name
Description Gene Name
SPOT_ID Control Probe

Data table
ID ENTREZ_GENE_ID ORF Description SPOT_ID
1_at 1 A1BG alpha-1-B glycoprotein
10_at 10 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase)
100_at 100 ADA adenosine deaminase
1000_at 1000 CDH2 cadherin 2, type 1, N-cadherin (neuronal)
10001_at 10001 MED6 mediator complex subunit 6
10002_at 10002 NR2E3 nuclear receptor subfamily 2, group E, member 3
10003_at 10003 NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2
10004_at 10004 NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1
10005_at 10005 ACOT8 acyl-CoA thioesterase 8
10006_at 10006 ABI1 abl-interactor 1
10007_at 10007 GNPDA1 glucosamine-6-phosphate deaminase 1
10008_at 10008 KCNE3 potassium voltage-gated channel, Isk-related family, member 3
10009_at 10009 ZBTB33 zinc finger and BTB domain containing 33
1001_at 1001 CDH3 cadherin 3, type 1, P-cadherin (placental)
10010_at 10010 TANK TRAF family member-associated NFKB activator
10011_at 10011 SRA1 steroid receptor RNA activator 1
10013_at 10013 HDAC6 histone deacetylase 6
10014_at 10014 HDAC5 histone deacetylase 5
10015_at 10015 PDCD6IP programmed cell death 6 interacting protein
10016_at 10016 PDCD6 programmed cell death 6

Total number of rows: 16313

Table truncated, full table size 957 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7144_HsNuGOHs1a520180_Hs_ENTREZG.cdf.gz 4.8 Mb (ftp)(http) CDF

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