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Platform GPL8201 Query DataSets for GPL8201
Status Public on Feb 24, 2009
Title Affymetrix GeneChip Rat Genome 230 2.0 Array [CDF:Rn230_Rn_ENTREZG]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description This platform is identical to GPL1355 but a custom CDF environment was used to extract data. We used CDF: Rn230_Rn_ENTREZG (version 10). The CDF can be found at the Web link below.
 
Web link http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download_v10.asp
Citation(s) 16284200
Submission date Feb 18, 2009
Last update date Feb 24, 2009
Contact name Johannes M Freudenberg
E-mail(s) johannes.freudenberg@nih.gov
Phone 919-541-4996
URL http://niehs.nih.gov/
Organization name NIEHS
Department Biostatistics Branch
Street address 111 TW Alexander Dr
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Samples (113) GSM373016, GSM373017, GSM373018, GSM373019, GSM373020, GSM373021 
Series (3)
GSE14933 Influence of Fatty Acid Diets on Gene Expression in Rat Mammary Epithelial Cells
GSE17819 Estrogen-driven Prolactin-mediated Gene Expression Networks Hormone Induced Prostatic Dysplasia
GSE27926 Expression data from F344N rats in long and short photoperiods
Relations
Alternative to GPL1355 (Alternative CDF [official])

Data table header descriptions
ID
GB_ACC GenBank accession number of the shortest sequence with most probe match GenBank Accession number
ProbeHitCnt Number of probes in the probe set with perfect match to the best sequence
Strand Strand of the probe match on the best sequence
Length Length of the best sequence
SPOT_ID
ORF Entrez Gene Identifier with perfect match to the best sequence

Data table
ID GB_ACC ProbeHitCnt Strand Length SPOT_ID ORF
112400_at AF194993 30 + 3072 112400
113882_at CA510326 11 - 750 113882
113892_at AI411528 11 - 558 113892
113893_at BC087579 17 + 1225 113893
113894_at BC061575 11 + 2080 113894
113898_at BG670635 8 + 468 113898
113900_at BF410859 8 - 479 113900
113901_at AI639227 9 - 418 113901
113902_at CB585533 11 - 586 113902
113906_at BC061748 20 + 1795 113906
113907_at AB010154 11 + 1529 113907
113911_at BI295805 6 - 697 113911
113912_at AF462390 10 + 1422 113912
113914_at AF421352 11 + 999 113914
113917_at NM_053614 11 + 593 113917
113918_at NM_133296 8 + 1950 113918
113922_at DV724942 11 + 565 113922
113927_at NM_053615 10 + 978 113927
113929_at BI303915 10 - 577 113929
113931_at CO393152 11 - 817 113931

Total number of rows: 11555

Table truncated, full table size 402 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8201_rn230rnentrezgcdf.tar.gz 977.1 Kb (ftp)(http) TAR

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