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Platform GPL8764 Query DataSets for GPL8764
Status Public on Jun 25, 2009
Title Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Gallus gallus (Chicken) Oligo Microarray by Agilent Technologies

Arrays of this design have barcodes that begin with 16015068 or 2515068.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13820.
 
Submission date Jun 24, 2009
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (72) GSM424306, GSM424307, GSM424308, GSM424309, GSM436844, GSM436845 
Series (12)
GSE16918 Identification of differentially expressed genes in early inner ear development
GSE17523 Effect of auxin (indole-3-acetic acid) on chicken DT40 cells
GSE24939 Differential Gene Expression Profiles in Broiler Chickens with Gangrenous Dermatitis (GD)
Relations
Alternative to GPL13820

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
SPOT_ID Spot identifier
GB_LIST GenBank Accession number
miRNA_ID
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME CONTROL_TYPE GENE_SYMBOL GENE_NAME ACCESSION_STRING SPOT_ID GB_LIST miRNA_ID CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 266 170 GE_BrightCorner pos CONTROL
2 266 168 DarkCorner pos CONTROL
3 266 166 DarkCorner pos CONTROL
4 266 164 DarkCorner pos CONTROL
5 266 162 DarkCorner pos CONTROL
6 266 160 DarkCorner pos CONTROL
7 266 158 DarkCorner pos CONTROL
8 266 156 DarkCorner pos CONTROL
9 266 154 DarkCorner pos CONTROL
10 266 152 DarkCorner pos CONTROL
11 266 150 DarkCorner pos CONTROL
12 266 148 A_87_P019755 FALSE gb|CO764611 CO764611 chr1:106878024-106877965 1q22 spleen_EST00337 Spleen cDNA Library Gallus gallus cDNA 3', mRNA sequence [CO764611] AAATCAGCCTATGAAGGAAATTGCTGTAGCTAAACCTACTGCCTACTCCTGTCCATTAGT
13 266 146 A_87_P017026 FALSE gb|CR385627|tc|TC207472|tc|TC207451 |tc|TC207472|tc|TC207451 CR385627 chr5:54451532-54451473 5q22 Gallus gallus finished cDNA, clone ChEST385i19. [CR385627] ATGTATTTTTAAAGGGTCCCGTTCACTTGGGTGGCTCAATCAGTCTCCCTTCTCTATTGT
14 266 144 A_87_P009061 FALSE SRF serum response factor (c-fos serum response element-binding transcription factor) gb|U50596|gb|CR389867|tc|TC190249 |tc|TC190249 U50596,CR389867 chrUn:123032375-123032434 unmapped Gallus gallus serum response factor (SRF) mRNA, MADS box to COOH terminus, partial cds. [U50596] GO:0003700(transcription factor activity)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0043565(sequence-specific DNA binding) AAAGAAGCTTGTCTCTTGAGGAGAGGATGTGCTCCATCCTGTACATAAATCCCGGGGGCC
15 266 142 A_87_P002205 FALSE tc|TC223031 tc|TC223031 chr4:82696761-82696820 4q24 Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (5%) [TC223031] CGCACGCAGTTTATCGGAAAGACACTAGGAACCGAATCCCGATGCTCACAGCATAGCACA
16 266 140 A_87_P009407 FALSE LOC404299 hypothetical protein LOC404299 gb|M12111 M12111 chr1:044889506-044889447 1q11 Chicken processed pseudogene, complete cds. [M12111] GGTGGTTGCCGGTACGTTCCAAAAGGCGGTTATTTTAAACTTCGAATCGACCAATGAGAT
17 266 138 A_87_P009756 FALSE gb|DN202332 DN202332 chr2:135314195-135314254 2q26 D6U6 Cranial [DN202332] CCTCTGGAAAACGAATTATTTTAACCTCGGCGCTGACAAAAGGAGAGGAAAATTCACATT
18 266 136 A_87_P038460 FALSE chr1:104482083-104482142 1q22 GTCGATATGCAAGCAGAGGATGAAGTCAGTATTTTTTGGCTAGCATAAAAGAACAGTTAA
19 266 134 A_87_P034769 FALSE gb|BU104865|tc|TC196242 |tc|TC196242 BU104865 chr5:15603861-15603920 5q12 603004221F1 CSEQCHL01 Gallus gallus cDNA clone ChEST19i6 5', mRNA sequence [BU104865] TAGTGAATCGGGTAGTGTGGATGAATTGCAGAGTCAGCTCTTGGAATGGCAGGAAAATGT
20 266 132 A_87_P019734 FALSE gb|CO764900 CO764900 unmapped unmapped spleen_EST00626 Spleen cDNA Library Gallus gallus cDNA 3', mRNA sequence [CO764900] CCTCTTGGCATGCTAAAAAGCAGGGGCTAACTTCATTTGCTCCTTACCCACTGGATAAAA

Total number of rows: 45220

Table truncated, full table size 10132 Kbytes.




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Supplementary file Size Download File type/resource
GPL8764_old_annotations.txt.gz 3.2 Mb (ftp)(http) TXT

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