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Status
Public on Jun 25, 2009
Title
Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Gallus gallus (Chicken) Oligo Microarray by Agilent Technologies Arrays of this design have barcodes that begin with 16015068 or 2515068. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13820.
Submission date
Jun 24, 2009
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (72)
GSM424306 , GSM424307 , GSM424308 , GSM424309 , GSM436844 , GSM436845
GSM436846 ,
GSM436847 ,
GSM613000 ,
GSM613001 ,
GSM613408 ,
GSM613409 ,
GSM613410 ,
GSM613411 ,
GSM613436 ,
GSM613437 ,
GSM613438 ,
GSM613439 ,
GSM613440 ,
GSM613441 ,
GSM723254 ,
GSM723255 ,
GSM723256 ,
GSM723257 ,
GSM723258 ,
GSM723259 ,
GSM723260 ,
GSM723261 ,
GSM732667 ,
GSM732668 ,
GSM732669 ,
GSM732670 ,
GSM732671 ,
GSM732672 ,
GSM732673 ,
GSM732674 ,
GSM732675 ,
GSM732676 ,
GSM738766 ,
GSM738767 ,
GSM738768 ,
GSM738769 ,
GSM738770 ,
GSM738771 ,
GSM738772 ,
GSM738773 ,
GSM738774 ,
GSM738775 ,
GSM738776 ,
GSM738777 ,
GSM749825 ,
GSM749826 ,
GSM749827 ,
GSM749828 ,
GSM749829 ,
GSM749830 ,
GSM749831 ,
GSM749832 ,
GSM749833 ,
GSM749834 ,
GSM749835 ,
GSM749836 ,
GSM749837 ,
GSM749838 ,
GSM749839 ,
GSM749840 ,
GSM769234 ,
GSM769235 ,
GSM1239817 ,
GSM1239818 ,
GSM1239819 ,
GSM1239820
Series (12)
GSE16918
Identification of differentially expressed genes in early inner ear development
GSE17523
Effect of auxin (indole-3-acetic acid) on chicken DT40 cells
GSE24939
Differential Gene Expression Profiles in Broiler Chickens with Gangrenous Dermatitis (GD)
GSE24963
Gene expression determination in breast muscle associated with the phenotypic expression of feed efficiency (FE) in a single male broiler line
GSE24966
The effects of novel adjuvant complex and CpG ODN on host immune response to recombinant Eimeria profilin vaccine
GSE29257
Differential gene expression in immortal DF-1 chicken embryo fibroblast cell line
GSE29258
Microarray analysis in senescent chicken embryo fibroblast
GSE29596
Identification of avian RIG-I responsive genes during influenza infection
GSE29805
Gene expression analysis of host spleen responses to Marek's disease virus infection in susceptible and resistant chickens
GSE30269
An integrated transcriptome analysis to the characterization of host responses against infectious laryngostracheitis virus vaccine infection in chicken embryo lung cells
GSE31055
Microarray analysis of up-regulated genes accompanying filial imprinting in domestic chicks (Gallus gallus domesticus)
GSE51154
Genome-wide transcriptional changes in the Clostridium perfringens-afflicted chicken intestine in an avian necrotic enteritis (NE) disease model
Relations
Alternative to
GPL13820
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
CONTROL_TYPE
Control type
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
SPOT_ID
Spot identifier
GB_LIST
GenBank Accession number
miRNA_ID
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GO_ID
GoIDs
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
CONTROL_TYPE
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
SPOT_ID
GB_LIST
miRNA_ID
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
1
266
170
GE_BrightCorner
pos
CONTROL
2
266
168
DarkCorner
pos
CONTROL
3
266
166
DarkCorner
pos
CONTROL
4
266
164
DarkCorner
pos
CONTROL
5
266
162
DarkCorner
pos
CONTROL
6
266
160
DarkCorner
pos
CONTROL
7
266
158
DarkCorner
pos
CONTROL
8
266
156
DarkCorner
pos
CONTROL
9
266
154
DarkCorner
pos
CONTROL
10
266
152
DarkCorner
pos
CONTROL
11
266
150
DarkCorner
pos
CONTROL
12
266
148
A_87_P019755
FALSE
gb|CO764611
CO764611
chr1:106878024-106877965
1q22
spleen_EST00337 Spleen cDNA Library Gallus gallus cDNA 3', mRNA sequence [CO764611]
AAATCAGCCTATGAAGGAAATTGCTGTAGCTAAACCTACTGCCTACTCCTGTCCATTAGT
13
266
146
A_87_P017026
FALSE
gb|CR385627|tc|TC207472|tc|TC207451
|tc|TC207472|tc|TC207451
CR385627
chr5:54451532-54451473
5q22
Gallus gallus finished cDNA, clone ChEST385i19. [CR385627]
ATGTATTTTTAAAGGGTCCCGTTCACTTGGGTGGCTCAATCAGTCTCCCTTCTCTATTGT
14
266
144
A_87_P009061
FALSE
SRF
serum response factor (c-fos serum response element-binding transcription factor)
gb|U50596|gb|CR389867|tc|TC190249
|tc|TC190249
U50596,CR389867
chrUn:123032375-123032434
unmapped
Gallus gallus serum response factor (SRF) mRNA, MADS box to COOH terminus, partial cds. [U50596]
GO:0003700(transcription factor activity)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0043565(sequence-specific DNA binding)
AAAGAAGCTTGTCTCTTGAGGAGAGGATGTGCTCCATCCTGTACATAAATCCCGGGGGCC
15
266
142
A_87_P002205
FALSE
tc|TC223031
tc|TC223031
chr4:82696761-82696820
4q24
Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (5%) [TC223031]
CGCACGCAGTTTATCGGAAAGACACTAGGAACCGAATCCCGATGCTCACAGCATAGCACA
16
266
140
A_87_P009407
FALSE
LOC404299
hypothetical protein LOC404299
gb|M12111
M12111
chr1:044889506-044889447
1q11
Chicken processed pseudogene, complete cds. [M12111]
GGTGGTTGCCGGTACGTTCCAAAAGGCGGTTATTTTAAACTTCGAATCGACCAATGAGAT
17
266
138
A_87_P009756
FALSE
gb|DN202332
DN202332
chr2:135314195-135314254
2q26
D6U6 Cranial [DN202332]
CCTCTGGAAAACGAATTATTTTAACCTCGGCGCTGACAAAAGGAGAGGAAAATTCACATT
18
266
136
A_87_P038460
FALSE
chr1:104482083-104482142
1q22
GTCGATATGCAAGCAGAGGATGAAGTCAGTATTTTTTGGCTAGCATAAAAGAACAGTTAA
19
266
134
A_87_P034769
FALSE
gb|BU104865|tc|TC196242
|tc|TC196242
BU104865
chr5:15603861-15603920
5q12
603004221F1 CSEQCHL01 Gallus gallus cDNA clone ChEST19i6 5', mRNA sequence [BU104865]
TAGTGAATCGGGTAGTGTGGATGAATTGCAGAGTCAGCTCTTGGAATGGCAGGAAAATGT
20
266
132
A_87_P019734
FALSE
gb|CO764900
CO764900
unmapped
unmapped
spleen_EST00626 Spleen cDNA Library Gallus gallus cDNA 3', mRNA sequence [CO764900]
CCTCTTGGCATGCTAAAAAGCAGGGGCTAACTTCATTTGCTCCTTACCCACTGGATAAAA
Total number of rows: 45220 Table truncated, full table size 10132 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL8764_old_annotations.txt.gz
3.2 Mb
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TXT