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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 11, 2010 |
| Title |
[Mouse430_2] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Alternative CDF: affy9618alt] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
This is identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.
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| Submission date |
Nov 03, 2009 |
| Last update date |
Jan 11, 2010 |
| Contact name |
Marni J Falk |
| E-mail(s) |
falkm@email.chop.edu
|
| Phone |
215-590-4564
|
| Organization name |
CHOP
|
| Department |
Pediatrics/ Human Genetics
|
| Lab |
ARC 1002c
|
| Street address |
3615 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Samples (36)
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GSM467876, GSM467877, GSM467878, GSM467879, GSM2080618, GSM2080619
GSM2080620, GSM2080621, GSM2080622, GSM2080623, GSM2080624, GSM2080625, GSM2080626, GSM2080627, GSM2080628, GSM2080629, GSM2080630, GSM2080631, GSM2080632, GSM2080633, GSM2080634, GSM2080635, GSM2080636, GSM2080637, GSM2080638, GSM2080639, GSM2080640, GSM2080641, GSM2080642, GSM2080643, GSM2080644, GSM2080645, GSM2080646, GSM2080647, GSM2080648, GSM2080649
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| Series (2) |
| GSE18677 |
Cross-platform expression microarray performance in a mouse model of mitochondrial disease therapy |
| GSE78895 |
Rictor/mTORC2 signaling has opposing functions in adult glioma and childhood SHH medulloblastoma |
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| Relations |
| Alternative to |
GPL1261 (Alternative CDF [official]) |
| Data table header descriptions |
| ID |
Remapped probe set defined by AffyProbeMiner |
| Official_Symbol |
Number of probes in each probe set |
| Number_probes |
Official gene symbol |
| Entrezgene_ID |
NCBI Entrez gene ID |
| SPOT_ID |
set of genes |
| ORF |
|
| Data table |
| ID |
Official_Symbol |
Number_probes |
Entrezgene_ID |
SPOT_ID |
ORF |
| AFFYCUSTOMHF1 |
Ntrk1 |
11 |
18211 |
|
Ntrk1 |
| AFFYCUSTOMHF10 |
Rbp3 |
11 |
19661 |
|
Rbp3 |
| AFFYCUSTOMHF100 |
Opcml |
11 |
330908 |
|
Opcml |
| AFFYCUSTOMHF1000 |
Drd3 |
11 |
13490 |
|
Drd3 |
| AFFYCUSTOMHF10000 |
Top1 |
11 |
21969 |
|
Top1 |
| AFFYCUSTOMHF10001 |
Tex16 |
11 |
83556 |
|
Tex16 |
| AFFYCUSTOMHF10002 |
Mybpc3 |
11 |
17868 |
|
Mybpc3 |
| AFFYCUSTOMHF10003 |
Tnfrsf1b |
21 |
21938 |
|
Tnfrsf1b |
| AFFYCUSTOMHF10004 |
3110031B13Rik |
11 |
67288 |
|
3110031B13Rik |
| AFFYCUSTOMHF10005 |
EG234703;EG434434;LOC638133;LOC670252+668946:LOC668946+675230:LOC675230;Rpl10 |
2 |
110954;234703;434434;638133;670252 |
EG234703;EG434434;LOC638133;LOC670252+668946:LOC668946+675230:LOC675230;Rpl10 |
|
| AFFYCUSTOMHF10006 |
EG627427;EG666875;EG668771;LOC382931;LOC669985;LOC670155;LOC671972;LOC673015;LOC675010;Phgdh |
1 |
236539;382931;627427;666875;668771;669985;670155;671972;673015;675010 |
EG627427;EG666875;EG668771;LOC382931;LOC669985;LOC670155;LOC671972;LOC673015;LOC675010;Phgdh |
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| AFFYCUSTOMHF10007 |
1190002J23Rik |
5 |
68874 |
|
1190002J23Rik |
| AFFYCUSTOMHF10008 |
Foxj1 |
11 |
15223 |
|
Foxj1 |
| AFFYCUSTOMHF10009 |
Tsga13 |
11 |
116732 |
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Tsga13 |
| AFFYCUSTOMHF1001 |
Zfp511 |
27 |
69752 |
|
Zfp511 |
| AFFYCUSTOMHF10010 |
Kpna6 |
21 |
16650 |
|
Kpna6 |
| AFFYCUSTOMHF10011 |
Rnf17 |
25 |
30054 |
|
Rnf17 |
| AFFYCUSTOMHF10012 |
EG622568;Pkig |
2 |
18769;622568 |
EG622568;Pkig |
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| AFFYCUSTOMHF10013 |
Gipc2 |
11 |
54120 |
|
Gipc2 |
| AFFYCUSTOMHF10014 |
6430604K15Rik;9130019O22Rik;E430018J23Rik;Zfp764 |
10 |
101604;233893;269997;78921 |
6430604K15Rik;9130019O22Rik;E430018J23Rik;Zfp764 |
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Total number of rows: 23424
Table truncated, full table size 1287 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9523_affy9618alt.cdf.gz |
4.3 Mb |
(ftp)(http) |
CDF |
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