NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE103411 Query DataSets for GSE103411
Status Public on Sep 06, 2017
Title Silencing of Retrotransposons by SETDB1 Inhibits the Interferon Response in Acute Myeloid Leukemia: Data for CRISPR Screen, ChIP-seq, RNA-seq, and Stranded RNA-seq in THP-1 Cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 28887438
Submission date Sep 01, 2017
Last update date Jul 25, 2021
Contact name Trinna L. Cuellar
E-mail(s) trinna.cuellar@gmail.com
Phone 6092588586
Organization name Princeton University
Department Molecular Biology
Street address Lewis Thomas Lab, Washington Rd/MOF223C
City Princeton
State/province New Jersey
ZIP/Postal code 08544
Country USA
 
Platforms (2)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (42)
GSM2770709 CRISPR_screen_THP-1 Day7- Biorep 1
GSM2770710 CRISPR_screen_THP-1 Day7- Biorep 3
GSM2770711 CRISPR_screen_THP-1 Day7- Biorep 2
This SuperSeries is composed of the following SubSeries:
GSE103407 Next Generation Sequencing: Epignetics 300 CRISPR sgRNA screen in THP-1 Acute Myelogenous Leukemia Cells
GSE103408 H3K9me3 chIP-seq 5 days following disruption of the SETDB1 H3K9 trimethylase with two different sgRNAs (6, and 9) or non-targeting control
GSE103409 RNAseq to determine gene expression changes following depletion of SETDB1 in THP-1 AML Cells
Relations
BioProject PRJNA401164

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103411_RAW.tar 1.3 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap