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Series GSE106679 Query DataSets for GSE106679
Status Public on Nov 09, 2017
Title Brain-specific deletion of histone variant H2A.z results in cortical neurogenesis defects and neurodevelopmental disorder
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP experiment was performed with antibody against H3K36me3 (active motif; 61101). we generated genome-wide characterization of H3K36me3 occupancy in E13 H2A.Z cKO forebrain. We found H3K36me3 is decreased throughout the whole genome in E13 H2A.Z cKO forebrain.
 
Overall design Genomic characterization of H3K36me3 binding in E13 WT and brain-specific deficit H2A.z forebrain.
 
Contributor(s) Shen T, Jiao J
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Submission date Nov 08, 2017
Last update date May 15, 2019
Contact name Jianwei Jiao
Organization name Institute of Zoology, Chinese Academy of Sciences
Department State Key Laboratory of Reproductive Biology
Street address 1 Beichen West Road
City Beijing
State/province Beijing
ZIP/Postal code 100101
Country China
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (4)
GSM2845378 H2A.z1cKO-input
GSM2845379 H2A.z1cKO-H3K36me3-ChIP
GSM2845380 WT-input
Relations
BioProject PRJNA417668
SRA SRP124619

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106679_RAW.tar 22.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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