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Series GSE107891 Query DataSets for GSE107891
Status Public on Dec 12, 2017
Title Uterine Influences on Conceptus Development in Fertility-Classified Animals
Organism Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary This study relates to pregnancy outcome after assisted reproduction of fertility-classified cattle. The aim is to investigate how the uterine environment impacts and programs conceptus survival and development. The study found that ripple effects of dysregulated conceptus-endometrial interactions elicit post-elongation pregnancy loss in subfertile animals during the implantation period.
 
Overall design Heifer cows classified as high fertile (HF), subfertile (SF), or infertile (IF) were investigated. The RNA-seq analysis was performed for endometrium samples at day 17 of pregnancy. For comparison, non-pregnant cows were included in the analysis. RNA from conceptus of HF and SF pregnant animals (day 17) were also included in the RNA-seq analysis. A total of 25 endometrium samples (5 non-pregnant of each fertilty group, 5 pregnant HF, and 5 pregnant SF) and 27 conceptus samples (10 SF and 17 HF) were used in the RNA-seq analysis.
 
Contributor(s) Moraes JG, Behura SK, Geary TW, Hansen PJ, Neibergs HL, Spencer TE
Citation(s) 29432175
Submission date Dec 11, 2017
Last update date Mar 13, 2018
Contact name Thomas Spencer
E-mail(s) spencerte@missouri.edu
Organization name University of Missouri
Department Animal Sciences
Lab ASRC 158
Street address 920 East Campus Drive
City Columbia
State/province MO
ZIP/Postal code 65211
Country USA
 
Platforms (1)
GPL23055 Illumina NextSeq 500 (Bos taurus)
Samples (52)
GSM2882879 690_5cm_CONCEPTUS_SF
GSM2882880 748_CONCEPTUS_SF
GSM2882881 755_13.5cm_CONCEPTUS_SF
Relations
BioProject PRJNA421885
SRA SRP126481

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107891_Readcounts.txt.gz 1.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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