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| Status |
Public on Jul 25, 2018 |
| Title |
Genome-wide maps of EWS-FLI1 binding sites and histone modification in murine Ewing sarcoma cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We identified global DNA binding properties of EWS-FLI1 in mouse Ewing sarcoma. GGAA microsatellites were found as binding sites of EWS-FLI1 but with less frequency than that in human Ewing sarcoma, and genomic distribution is not conserved between human and mouse.
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| |
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| Overall design |
Examination of binding sites of EWS-FLI1, histone H3K27Ac and H3K27me3 in two Ewing sarcoma cell lines.
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| |
|
| Contributor(s) |
Shimizu R, Nakamura T |
| Citation(s) |
29945296 |
| Submission date |
Dec 29, 2017 |
| Last update date |
Mar 08, 2019 |
| Contact name |
Takuro Nakamura |
| E-mail(s) |
takuro-ind@umin.net
|
| Phone |
81-3-3570-0462
|
| Organization name |
Japanese Foundation for Cancer Research
|
| Department |
The Cancer Institute
|
| Lab |
Carcinogenesis
|
| Street address |
3-8-31 Ariake, Koto-ku
|
| City |
Tokyo |
| ZIP/Postal code |
135-8550 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA427908 |
| SRA |
SRP127730 |
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