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Series GSE109732 Query DataSets for GSE109732
Status Public on Mar 29, 2018
Title Development of plasma cell-prone germinal center B cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Higher- or lower-affinity GC B cells are directed to plasma cell or recycling GC cell fates; however, how commitment to the plasma cell fate takes place is unclear. By using the level of Bcl6 as a marker, we found that a population of light zone (LZ) GC cells, Bcl6loCD69hi with IRF4 and higher-affinity BCRs or Bcl6hiCD69hi with lower- affinity BCRs, favored the plasma cell or recycling GC cell fate, respectively. Mechanistically, CD40 acted as a dose-dependent regulator for Bcl6loCD69hi cell formation. Furthermore, we found that ICAM1 and SLAM levels on Bcl6loCD69hi cells were higher than on Bcl6hiCD69hi cells, thereby affording more stable TFH-GC B cell contacts, while attenuating this contact down-regulated IRF4. These data support the model that commitment to the plasma cell begins in the GC, and suggest that stability and possibly duration of TFH-GC B cell contacts are key for formation of plasma cell-prone precursor GC cells.
 
Overall design mRNA profiles of GC B cell subsets and GC-derived plasmablast were generated by barcode-based digital RNA sequencing.
 
Contributor(s) Ise W, Shiroguchi K, Kurosaki T
Citation(s) 29669250
Submission date Jan 26, 2018
Last update date Jan 27, 2019
Contact name Eri Nishiyama
E-mail(s) eri.nishiyama@riken.jp
Organization name Riken
Department Center for Biosystems Dynamics Research
Lab Laboratory for Prediction of Cell Systems Dynamics
Street address 6-2-3 Furuedai
City Suita
State/province Osaka
ZIP/Postal code 565-0874
Country Japan
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (15)
GSM2957687 DZ 1
GSM2957688 DZ 2
GSM2957689 DZ 3
Relations
BioProject PRJNA431808
SRA SRP131526

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Supplementary file Size Download File type/resource
GSE109732_GeneExpression_DZ_Fraction1-3_GC-PB.txt.gz 515.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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