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Series GSE114836 Query DataSets for GSE114836
Status Public on Jun 21, 2018
Title ICAM-1 deficiency in the bone marrow niche impairs quiescence and repopulation of hematopoietic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The bone marrow niche plays a critical role in controlling the fate of hematopoietic stem cells (HSCs) by integrating intrinsic and extrinsic signals. However, the molecular events in the HSC niche remain to be investigated. Here, we report that intercellular adhesion molecule-1 (ICAM-1) maintains HSC quiescence and repopulation capacity in the niche. ICAM-1-deficient mice (ICAM-1-/-) displayed significant expansion of phenotypic long-term HSCs with impaired quiescence, as well as favors myeloid cell expansion. ICAM-1-deficient HSCs presented normal reconstitution capacity during serial transplantation; however, reciprocal transplantation experiments showed that ICAM-1 deficiency in the niche impaired HSCs quiescence and repopulation capacity. In addition, ICAM-1 deletion caused failure to retain HSCs in the bone marrow and changed the expression profile of stroma cell-derived factors, possibly representing the mechanism for defective HSCs in ICAM-1-/- mice. Collectively, these observations identify ICAM-1 as a regulator in the bone marrow niche.
 
Overall design WT donor LSK (Ly5.1+) were sorted after transplanted into WT (n=3) or ICAM-1-/- (n=3) recipients (Ly5.2+) for 8 weeks, we analysis the transcriptional profile of LSK hematopoietic stem cells after transplantation by High-throughput RNA-sequencing.
 
Contributor(s) Zou B, Liu Y
Citation(s) 29937143
Submission date May 23, 2018
Last update date Mar 08, 2019
Contact name Lingyun Zheng
E-mail(s) zhenglingyun@gdpu.edu.cn
Organization name Guangdong Pharmaceutical University
Department School of Life Sciences and Biopharmaceutics
Street address 280 Wai Huan Dong Lu, Guangzhou Higher Education Mega Center
City Guangzhou
State/province Guangdong
ZIP/Postal code 510006
Country China
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (6)
GSM3151316 WT_rep1
GSM3151317 WT_rep2
GSM3151318 WT_rep3
Relations
BioProject PRJNA472790
SRA SRP148801

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114836_fpkm_summary.xlsx 1.2 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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