NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE115360 Query DataSets for GSE115360
Status Public on Dec 12, 2018
Title SIRT7-dependent deacetylation of fibrillarin controls H2A methylation and rRNA synthesis during the cell cycle
Organism Homo sapiens
Experiment type Other
Summary Fibrillarin (FBL) is a dual function nucleolar protein which catalyses 2ยด-O methylation of pre-rRNA and methylation of histone H2A at glutamine 104 (H2AQ104me). The mechanisms that regulate FBL activity are unexplored. Here we show that FBL is acetylated at several lysine residues by the acetyltransferase CBP and deacetylated by SIRT7. While reversible acetylation does not impact FBL-mediated pre-rRNA methylation, hyperacetylation impairs the interaction of FBL with histone H2A and chromatin, thereby compromsing H2AQ104 methylation (H2AQ104me) and rDNA transcription. SIRT7-dependent deacetylation of FBL ensures H2AQ104me and high levels of rRNA synthesis during interphase. At the onset of mitosis, nucleolar disassembly is accompanied by hyperacetylation of FBL, loss of H2AQ104me and repression of Pol I transcription. H2AQ104me and transcriptional activity are restored by overexpression of an acetylation-deficient but not by an acetylation-mimicking FBL mutant. The results reveal that SIRT7-dependent deacetylation impacts nucleolar activity by a FBL-driven circuitry that mediates cell cycle-dependent fluctuation of rDNA transcription.
 
Overall design A total of 17 libraires analyzed divided on 6 experimental conditions, where 5 are made in triplicates, and one in duplicates.
 
Contributor(s) Iyer-Bierhoff A, Krogh N, Tessarz P, Ruppert T, Nielsen H, Grummt I
Citation(s) 30540930
Submission date Jun 05, 2018
Last update date Mar 13, 2019
Contact name Nicolai Krogh
E-mail(s) nicolaikj@sund.ku.dk
Organization name University of Copenhagen
Department Department of Cellular and Molecular Medicine
Lab RNA Group - Prof. Henrik Nielsen
Street address Blegdamsvej 3B
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (17)
GSM3176534 HEK293T_SIRT7_++_cyto_1
GSM3176535 HEK293T_SIRT7_++_cyto_2
GSM3176536 HEK293T_SIRT7_++_cyto_3
Relations
BioProject PRJNA474692
SRA SRP149808

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115360_Iyer-Bierhoff_RiboMeth-seq_data.xlsx 5.0 Mb (ftp)(http) XLSX
GSE115360_Iyer-Bierhoff_rDNA_sequences.fasta.gz 2.3 Kb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap