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Series GSE115984 Query DataSets for GSE115984
Status Public on Nov 07, 2018
Title The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 30604745
Submission date Jun 19, 2018
Last update date Mar 19, 2019
Contact name Michal R. Gdula
E-mail(s) michal.gdula@bioch.ox.ac.uk
Organization name Oxford University
Street address South Parks Road
City Oxford
ZIP/Postal code OX1 3RF
Country United Kingdom
 
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (108)
GSM3040183 SmcHD1_wt_DC_rep1_ChIP_Lib_11A
GSM3040184 SmcHD1_mut_DC_rep1_ChIP_Lib_12A
GSM3040185 SmcHD1_wt_DC_rep2_ChIP_Lib_13A
This SuperSeries is composed of the following SubSeries:
GSE111820 SmcHD1,H3k27me3,CTCF and RAd21 ChIP-seq
GSE115983 Hi-C in wild-type and SmcHD1 MommeD1 MEFs, first set
GSE121087 Hi-C in wild-type, SmcHD1 MommeD1mut and somKO MEFs
Relations
BioProject PRJNA476698

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115984_RAW.tar 89.3 Gb (http)(custom) TAR (of BED, BEDGRAPH, BW, TXT)
SRA Run SelectorHelp
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