|
| Status |
Public on Jan 05, 2019 |
| Title |
Indole signaling at the host-microbiota-pathogen interface |
| Organism |
Escherichia coli O157:H7 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA seq experiment was perfomed in the presence and absence of 500uM indole
|
| |
|
| Overall design |
EHEC strain 86 24 was used for this study. WT and △tnaA EHEC were grown until late log phase in low gluocse DMEM in the presence and absence of 500µM indole. RNA was extracted from these samples. The experiment was conducted with three biological replicates.
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| |
|
| Contributor(s) |
Kumar A, Sperandio V |
| Citation(s) |
31164470, 35916401 |
| Submission date |
Sep 04, 2018 |
| Last update date |
Sep 15, 2022 |
| Contact name |
Aman Kumar |
| E-mail(s) |
aman.kumar@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Department |
Microbiology
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
Texas |
| ZIP/Postal code |
75390-9048 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL25528 |
Illumina HiSeq 2500 (Escherichia coli O157:H7) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA489260 |
| SRA |
SRP159530 |
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