NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE123341 Query DataSets for GSE123341
Status Public on Mar 06, 2019
Title Next generation sequening on control salivary submandibular glands versus glands from mice with an epithelial deletion in SOX10 via the Cre-Flox system
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report sequencing data on fetal mouse submandibular glands (SMGs) where SOX10 was deleted in the epithelia. By obtaining embryonic day 16 (E16) SMGs, we compared control glands with glands where SOX10 was deleted in the epithelial compartment. We found that loss of SOX10 resulted in smaller glands, which had reduced expression of genes related to the initiation of acinar, myoepithelial and intercalated duct cells.
 
Overall design Examination of gene expression in 2 different glands.
 
Contributor(s) Lombaert I
Citation(s) 30713042
Submission date Dec 04, 2018
Last update date Mar 06, 2019
Contact name Isabelle Lombaert
Organization name University of Michigan
Street address 2800 Plymouth Rd
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL15103 Illumina HiSeq 1000 (Mus musculus)
Samples (7)
GSM3501234 WT 1
GSM3501235 WT 2
GSM3501236 WT 3
Relations
BioProject PRJNA508384
SRA SRP172844

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123341_DESeq2_DE_results_WT_vs_SOX10FF.txt.gz 968.2 Kb (ftp)(http) TXT
GSE123341_EdgeR_DE_results_WT_vs_SOX10FF.txt.gz 611.4 Kb (ftp)(http) TXT
GSE123341_RawCountFile.txt.gz 405.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap