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| Status |
Public on Sep 24, 2019 |
| Title |
Gene expression pattern comparison depend on morphological change in rat pXEN cells |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
pXEN cells have intrinsic property for vacuolation generally and in proper condition, vacuolated cells contribute to cavitation, so call vesiculation, via merge together. So, we want to find meaning of morphogenesis and connection with in vivo gastrulation stage.
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| Overall design |
Samples were cultured in each different condition and prepared each 3 per sample independently. Vacuolated cells were collected from three differnet way, in BCS and Chir99021 with and without sorting, and vesicles were prepared from two condition, with and without serum.
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| Contributor(s) |
Kim M, Zhong Y, Jung KH, Chai YG |
| Citation(s) |
31492758 |
| Submission date |
Dec 11, 2018 |
| Last update date |
Dec 24, 2019 |
| Contact name |
Yixiang Zhong |
| E-mail(s) |
zhong.b.yixiang@gmail.com
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| Organization name |
Hanyang University
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| Street address |
55 Hanyangdeahak-ro, Sangnok-gu
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| City |
Ansan |
| State/province |
Gyeonggi-do |
| ZIP/Postal code |
15588 |
| Country |
South Korea |
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| Platforms (1) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
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| Samples (18)
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| GSM3507601 |
pXEN_vacuole_CHIR_unsorted, 1 |
| GSM3507602 |
pXEN_vacuole_CHIR_unsorted, 2 |
| GSM3507603 |
pXEN_vacuole_CHIR_unsorted, 3 |
| GSM3507604 |
pXEN_vacuole_BCS_unsorted, 1 |
| GSM3507605 |
pXEN_vacuole_BCS_unsorted, 2 |
| GSM3507606 |
pXEN_vacuole_BCS_unsorted, 3 |
| GSM3507607 |
pXEN_vacuole_CHIR_sorted, 1 |
| GSM3507608 |
pXEN_vacuole_CHIR_sorted, 2 |
| GSM3507609 |
pXEN_vacuole_CHIR_sorted, 3 |
| GSM3507610 |
pXEN_vesicle_CHIR_Serum, 1 |
| GSM3507611 |
pXEN_vesicle_CHIR_Serum, 2 |
| GSM3507612 |
pXEN_vesicle_CHIR_Serum, 3 |
| GSM3507613 |
pXEN_vesicle_CHIR_Serum_free, 1 |
| GSM3507614 |
pXEN_vesicle_CHIR_Serum_free, 2 |
| GSM3507615 |
pXEN_vesicle_CHIR_Serum_free, 3 |
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| Relations |
| BioProject |
PRJNA509343 |
| SRA |
SRP173261 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE123598_RAW.tar |
2.3 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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