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| Status |
Public on Mar 03, 2019 |
| Title |
Gene expression profiles of 35 paired HCC and non-tumor tissues by RNA-seq data |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This study aims to uncover the transcriptomic variations in HCC
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| |
|
| Overall design |
RNA-seq reads per sample were mapped to the reference using Tophat v2.0.12. The reference consists of the human reference genome and the Ensembl annotated human transcriptome (GRCh37/hg19 assembly). The overall mapping rate per sample was 92% on average. Next, the mapped reads were processed using cufflinks v2.2.1 with the ‘classic-fpkm’ library normalization method and ‘fr-unstranded’ library type to quantitate gene expression against Ensembl transcript annotation.
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| |
|
| Contributor(s) |
Jiang Y, Zhang L |
| Citation(s) |
30814741, 32968453 |
| Submission date |
Jan 02, 2019 |
| Last update date |
Sep 28, 2020 |
| Contact name |
Ying Jiang |
| Organization name |
National Center for Protein Sciences (Beijing)
|
| Street address |
Life Science Park Road
|
| City |
Beijing |
| ZIP/Postal code |
102206 |
| Country |
China |
| |
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| Platforms (1) |
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| Samples (70)
|
|
| Relations |
| BioProject |
PRJNA512451 |
| SRA |
SRP174991 |
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