NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE124894 Query DataSets for GSE124894
Status Public on Jul 19, 2019
Title Downregulation of the histone methyltransferase SETD2 promotes imatinib resistance in chronic myeloid leukemia cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Epigenetic modifiers were important players in the development of hematological malignancies and sensitivity to therapy. Mutations of SET domain-containing 2 (SETD2), a methyltransferase that catalyzes the trimethylation of histone 3 on lysine 36 (H3K36me3), were found in various myeloid malignancies. However, the detailed mechanisms through which SETD2 confers chronic myeloid leukemia progression and resistance to therapy targeting on BCR-ABL remain unclear. Here we found SETD2 acted as a tumor suppressor in CML. The novel oncogenic targets MYCN and ERG were shown to be the direct downstream targets of SETD2, where their overexpression induced by SETD2 knockdown caused imatinib insensitivity and leukemic stem cell enrichment in CML cell lines. Treatment with JIB-04, an inhibitor that restores H3K36me3 levels through blockade of its demethylation, successfully improved the cell’s imatinib sensitivity and enhanced the chemotherapeutic effect.
 
Overall design RNA Sequencing Analysis between Imatinib Sensitive and Resistant TF1-BCR-ABL Cells.
 
Contributor(s) Sheng Y
Citation(s) 31054182
Submission date Jan 10, 2019
Last update date Jul 19, 2019
Contact name Sheng Yaru
E-mail(s) shengyaru@sjtu.edu.cn
Organization name State Key Laboratory of Oncogenes and Related Genes, Renji-Med-X Stem Cell Research Center
Street address Stem Cell Research Center, Ren Ji Hospital, 160 Pujian Road
City Shanghai
ZIP/Postal code 200127
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (4)
GSM3557987 BA rep1
GSM3557988 BA rep2
GSM3557989 VECTOR rep1
Relations
BioProject PRJNA514230
SRA SRP178217

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124894_fpkm.anno.txt.gz 9.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap