|
| Status |
Public on Apr 01, 2019 |
| Title |
Whole transcriptome sequencing of HOPX-depleted neonatal human keratinocytes |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The goal was to determine genes controlled by HOPX in differentiated human keratinocytes by comparison of HOPX-depleted vs. control keratinocyte transcriptomes
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| |
|
| Overall design |
Primary keratinocytes were infected with non-targeting short hairpin RNA (shCTRL) or HOPX-targeting short hairpin RNA (shHOPX), then differentiated in culture for 6 days before collection of RNA and sequencing. Each control and HOPX-knockdown was performed in triplicate, for a total of 6 samples.
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| |
|
| Contributor(s) |
Sun BK, Chen SY |
| Citation(s) |
30959041 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| K08 AR067853 |
Secreted Regulators of Epidermal Homeostasis |
THE REGENTS OF THE UNIV. OF CALIF., UNIV. OF CALIF., SAN DIEGO |
Bryan Sun |
|
| Submission date |
Jan 16, 2019 |
| Last update date |
Jul 01, 2019 |
| Contact name |
Bryan Sun |
| E-mail(s) |
bryansun@ucsd.edu
|
| Organization name |
UC San Diego
|
| Street address |
9500 Gilman Drive MC 0869
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093-0869 |
| Country |
USA |
| |
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| Platforms (1) |
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| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA515410 |
| SRA |
SRP179716 |
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