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GEO accession:
Series GSE127515
Query DataSets for GSE127515
Status
Public on Nov 17, 2020
Title
UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32977832
Submission date
Feb 28, 2019
Last update date
Nov 19, 2020
Contact name
Beisi Xu
E-mail(s)
beisi.xu@stjude.org
Organization name
St Jude Children's Research Hosipital
Department
Center for Applied Bioinformatics
Street address
262 Danny Thomas Pl
City
Memphis
State/province
Tennessee
ZIP/Postal code
38105
Country
USA
Platforms (4)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (50)
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GSM3635726
ATAC-hNSC-H7-UTXKO replicate 1
GSM3635727
ATAC-hNSC-H7-UTXKO replicate 2
GSM3635728
ATAC-hNSC-H7-WT replicate 1
GSM3635729
ATAC-hNSC-H7-WT replicate 2
GSM3635730
ATAC-hNSC-H9-UTXKO replicate 1
GSM3635731
ATAC-hNSC-H9-UTXKO replicate 2
GSM3635732
ATAC-hNSC-H9-WT replicate 1
GSM3635733
ATAC-hNSC-H9-WT replicate 2
GSM3635734
H3K27Ac-AB2-hNSC-H7-UTXKO
GSM3635735
H3K27Ac-AB2-hNSC-H7-WT
GSM3635736
H3K27Ac-AB2-hNSC-H9-UTXKO
GSM3635737
H3K27Ac-AB2-hNSC-H9-WT
GSM3635738
H3K27me3-AB1-hNSC-H7-UTXKO
GSM3635739
H3K27me3-AB1-hNSC-H7-WT
GSM3635740
H3K27me3-AB1-hNSC-H9-UTXKO
GSM3635741
H3K27me3-AB1-hNSC-H9-WT
GSM3635742
H3K27me3-AB3-hNSC-H7-UTXKO
GSM3635743
H3K27me3-AB3-hNSC-H7-WT
GSM3635744
H3K27me3-AB3-hNSC-H9-UTXKO
GSM3635745
H3K27me3-AB3-hNSC-H9-WT
GSM3635746
H3K4me3-AB2-hNSC-H7-UTXKO
GSM3635747
H3K4me3-AB2-hNSC-H7-WT
GSM3635748
H3K4me3-AB2-hNSC-H9-UTXKO
GSM3635749
H3K4me3-AB2-hNSC-H9-WT
GSM3635750
INPUT-hNSC-H7-UTXKO-forK27me3
GSM3635751
INPUT-hNSC-H7-UTXKO-forK4me3K27ac
GSM3635752
INPUT-hNSC-H7-WT-forK27me3
GSM3635753
INPUT-hNSC-H7-WT-forK4me3K27ac
GSM3635754
INPUT-hNSC-H9-UTXKO-forK27me3
GSM3635755
INPUT-hNSC-H9-UTXKO-forK4me3K27ac
GSM3635756
INPUT-hNSC-H9-WT-forK27me3
GSM3635757
INPUT-hNSC-H9-WT-forK4me3K27ac
GSM3635758
UTX-AB3-hNSC
GSM3635759
UTX-AB4-hNSC
GSM3635760
INPUT-hNSC-forUTX
GSM3635763
RNA-hESC-H7-UTXKO replicate 4
GSM3635764
RNA-hESC-H9-UTXKO replicate 1
GSM3635765
RNA-hESC-H9-UTXKO replicate 2
GSM3635766
RNA-hESC-H9-UTXKO replicate 3
GSM3635767
RNA-hNeuronMat-H9-UTXKO replicate 1
GSM3635768
RNA-hNeuronMat-H9-UTXKO replicate 2
GSM3635769
RNA-hNeuronMat-H9-UTXKO replicate 3
GSM3635770
RNA-hNeuronMat-H9-WT replicate 1
GSM3635771
RNA-hNeuronMat-H9-WT replicate 2
GSM3635772
RNA-hNeuronMat-H9-WT replicate 3
GSM3635773
RNA-hNeurosphere-H9-UTXKO replicate 1
GSM3635774
RNA-hNeurosphere-H9-UTXKO replicate 2
GSM3635775
RNA-hNeurosphere-H9-UTXKO replicate 3
GSM3635776
RNA-hNeurosphere-H9-UTXKO replicate 4
GSM3635777
RNA-hNeurosphere-H9-UTXKO replicate 5
This SuperSeries is composed of the following SubSeries:
GSE127511
UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[ATAC-seq]
GSE127512
UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[ChIP-seq]
GSE127514
UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[RNA-seq]
Relations
BioProject
PRJNA524888
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Format
SOFT formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE127515_RAW.tar
451.6 Mb
(http)
(custom)
TAR (of BW, TXT)
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