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Series GSE128081 Query DataSets for GSE128081
Status Public on Feb 04, 2020
Title RNA helicase DDX21 mediates nucleotide stress responses (PRO-Seq)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary The RNA helicase DDX21 acts as trancriptional sensor for nucleotide lowering
 
Overall design PRO-seq analysis of DDX21 and CDK9 in human A375 melanoma cells treated with DMSO, 25 uMA77 1726 and 25uM A771726 plus nucleotides
 
Contributor(s) Santoriello C, Telmo H, Song Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 10, 2019
Last update date Feb 04, 2020
Contact name Leonard Zon
E-mail(s) zon@enders.tch.harvard.edu
Organization name Boston Children's Hospital
Department Oncology/Hematology
Street address 1 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (9)
GSM3664682 dmso_r1
GSM3664683 dmso_r2
GSM3664684 dmso_r3
This SubSeries is part of SuperSeries:
GSE128086 RNA helicase DDX21 mediates nucleotide stress responses
Relations
BioProject PRJNA526369
SRA SRP188036

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128081_hg19_A375_PROseq_A77Nuc_N3_spikenorm_dedup_F.bedGraph.gz 59.8 Mb (ftp)(http) BEDGRAPH
GSE128081_hg19_A375_PROseq_A77Nuc_N3_spikenorm_dedup_R.bedGraph.gz 59.1 Mb (ftp)(http) BEDGRAPH
GSE128081_hg19_A375_PROseq_A77_N3_spikenorm_dedup_F.bedGraph.gz 63.1 Mb (ftp)(http) BEDGRAPH
GSE128081_hg19_A375_PROseq_A77_N3_spikenorm_dedup_R.bedGraph.gz 62.2 Mb (ftp)(http) BEDGRAPH
GSE128081_hg19_A375_PROseq_DMSO_N3_spikenorm_dedup_F.bedGraph.gz 69.7 Mb (ftp)(http) BEDGRAPH
GSE128081_hg19_A375_PROseq_DMSO_N3_spikenorm_dedup_R.bedGraph.gz 68.9 Mb (ftp)(http) BEDGRAPH
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Raw data are available in SRA
Processed data are available on Series record

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