|
| Status |
Public on Dec 21, 2020 |
| Title |
LINC00266-1-encoded peptide regulates mRNA splicing |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The mRNA transcriptome profiling and splicing profiling mediated by LINC00266-1 and LINC00266-1-encoded peptide were investigated by RNA-seq.
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| |
|
| Overall design |
The mRNA profiles and mRNA splicing profiles of colon cancer cells HCT-116 (NC), HCT-116 with stably expressing LINC00266-1 ORF for encoding peptide (ORF), and HCT-116 with stably expressing 5'UTR-ORFmut in which start code ATG for encoding peptide was mutated to ATT (MT), were generated by RNA-sequencing (RNA-seq), in triplicate, using Illumina.
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| |
|
| Contributor(s) |
Yan G, Zhu S, Wang J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 18, 2019 |
| Last update date |
Dec 22, 2020 |
| Contact name |
Guang-Rong Yan |
| E-mail(s) |
jxygr007@yahoo.com
|
| Organization name |
Biomedicine Research Center, the Third Affiliated Hospital of Guangzhou Medical University
|
| Street address |
63 Duobao Road
|
| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510150 |
| Country |
China |
| |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA527803 |
| SRA |
SRP188720 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE128465_MTvsNC_A3SS.xlsx |
1007.7 Kb |
(ftp)(http) |
XLSX |
| GSE128465_MTvsNC_A5SS.xlsx |
690.6 Kb |
(ftp)(http) |
XLSX |
| GSE128465_MTvsNC_MXE.xlsx |
2.2 Mb |
(ftp)(http) |
XLSX |
| GSE128465_MTvsNC_RI.xlsx |
787.6 Kb |
(ftp)(http) |
XLSX |
| GSE128465_MTvsNC_SE.xlsx |
9.6 Mb |
(ftp)(http) |
XLSX |
| GSE128465_MTvsNC_deg.xlsx |
6.6 Mb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_A3SS.xlsx |
1.0 Mb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_A5SS.xlsx |
720.4 Kb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_MXE.xlsx |
2.5 Mb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_RI.xlsx |
801.0 Kb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_SE.xlsx |
10.4 Mb |
(ftp)(http) |
XLSX |
| GSE128465_ORFvsNC_deg.xlsx |
7.1 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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