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Series GSE129504 Query DataSets for GSE129504
Status Public on Feb 18, 2022
Title RNA immunoprecipitation sequencing (RIP-seq) in four types of cancer cell lines
Organism Homo sapiens
Experiment type Other
Summary The ribosomal protein S6 (RPS6) antibody used for RIP to measure the landscape associated RNA by sequencing
 
Overall design RNA immunoprecipitation (RIP) was performed using the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, USA) according to the manufacturer’s instructions. An aliquot of lysate was removed as an input control.RNA sequencing was performed with Illummina HiSeq X Ten Sequencer
 
Contributor(s) Liu Z, Liu S, Pang Y
Citation(s) 33710804
Submission date Apr 09, 2019
Last update date Feb 18, 2022
Contact name Zhiyong Liu
E-mail(s) liuzy271@163.com
Organization name Changhai Hospital
Street address changhai road 168
City Shanghai
State/province China
ZIP/Postal code 200433
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (8)
GSM3714494 3B-Input
GSM3714495 3B-RPS6
GSM3714496 HCT116-Input
Relations
BioProject PRJNA531600
SRA SRP191502

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129504_3B-RPS6_VS_3B-Input_all.txt.gz 1.7 Mb (ftp)(http) TXT
GSE129504_HCT116-RPS6_VS_HCT116-Input_all.txt.gz 1.7 Mb (ftp)(http) TXT
GSE129504_RPS6-DU145_VS_10-Input-DU145_all.txt.gz 1.7 Mb (ftp)(http) TXT
GSE129504_RPS6-SW1990_VS_10-Input-SW1990_all.txt.gz 1.6 Mb (ftp)(http) TXT
GSE129504_gene_expression.txt.gz 2.5 Mb (ftp)(http) TXT
GSE129504_gene_expression_2.txt.gz 2.5 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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