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GEO accession:
Series GSE129529
Query DataSets for GSE129529
Status
Public on Apr 24, 2019
Title
Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31202577
Submission date
Apr 09, 2019
Last update date
Jan 29, 2020
Contact name
Yaakov Maman
Organization name
Bar-Ilan University
Department
Azrieli Faculty of Medicine
Lab
Genome Instability & Cancer
Street address
Henrietta Szold 8
City
Safed
ZIP/Postal code
1311502
Country
Israel
Platforms (3)
GPL16417
Illumina MiSeq (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (73)
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GSM3714864
END_seq_PB_LIG4_2_5h_TRANSLOCATION
GSM3714865
END_seq_PB_LIG4_AsiSI_TRANSLOCATION
GSM3714866
END_seq_PB_LIG4_2_5h_DRB_TRX
GSM3714867
END_seq_ExoT_PB_LIG4_2_5h_DRB_TRX
GSM3714868
END_seq_PB_LIG4_AsiSI_DRB_TRX
GSM3714869
END_seq_PB_LIG4_2_5h_IFNB_TRX
GSM3714870
END_seq_ExoT_PB_LIG4_2_5h_IFNB_TRX
GSM3714871
END_seq_PB_LIG4_0_5h_TIME_COURSE
GSM3714872
END_seq_PB_LIG4_1h_TIME_COURSE
GSM3714873
END_seq_PB_LIG4_2_5h_TIME_COURSE
GSM3714874
END_seq_PB_LIG4_5h_TIME_COURSE
GSM3714875
END_seq_PB_LIG4_7_5h_TIME_COURSE
GSM3714876
END_seq_PB_LIG4_12_5h_TIME_COURSE
GSM3714877
END_seq_ExoT_PB_LIG4_0_5h_TIME_COURSE
GSM3714878
END_seq_ExoT_PB_LIG4_1h_TIME_COURSE
GSM3714879
END_seq_ExoT_PB_LIG4_2_5h_TIME_COURSE
GSM3714880
END_seq_ExoT_PB_LIG4_5h_TIME_COURSE
GSM3714881
END_seq_ExoT_PB_LIG4_7_5h_TIME_COURSE
GSM3714882
END_seq_ExoT_PB_LIG4_12_5h_TIME_COURSE
GSM3714883
END_seq_PB_LIG4_NT (control)
GSM3714884
END_seq_ExoT_PB_LIG4_NT (control)
GSM3714885
END_seq_PB_LIG4_2_5h_REVERSIBILITY
GSM3714886
END_seq_ExoT_PB_LIG4_2_5h_REVERSIBILITY
GSM3714887
END_seq_PB_LIG4_WASH_2_5h_REVERSIBILITY
GSM3714888
END_seq_ExoT_PB_LIG4_WASH_2_5h_REVERSIBILITY
GSM3714889
END_seq_PB_LIG4_TDP2_2_5h_REVERSIBILITY
GSM3714890
END_seq_ExoT_PB_LIG4_TDP2_2_5h_REVERSIBILITY
GSM3714891
END_seq_PB_LIG4_TDP2_WASH_2_5h_REVERSIBILITY
GSM3714892
END_seq_ExoT_PB_LIG4_TDP2_WASH_2_5h_REVERSIBILITY
GSM3714893
END_seq_PB_LIG4_EPOX_2_5h_REVERSIBILITY
GSM3714894
END_seq_ExoT_PB_LIG4_EPOX_2_5h_REVERSIBILITY
GSM3714895
END_seq_PB_LIG4_EPOX_WASH_2_5h_REVERSIBILITY
GSM3714896
END_seq_ExoT_PB_LIG4_EPOX_WASH_2_5h_REVERSIBILITY
GSM3714897
END_seq_PB_LIG4_WASH_0_5h_REVERSIBILITY
GSM3714898
END_seq_ExoT_PB_LIG4_WASH_0_5h_REVERSIBILITY
GSM3714899
END_seq_MEF_Smc3_PP_0_5h
GSM3714900
END_seq_MEF_Smc3_FF_0_5h
GSM3714901
END_seq_MEF_Wapl_FF_0_5h (control)
GSM3714902
END_seq_MEF_Wapl_FF_CRE_0_5h
GSM3714903
END_seq_HCT116_0_5h
GSM3714904
END_seq_HCT116__RAD21_AID_0_5h
GSM3714905
END_seq_HCT116_NT (control)
GSM3714906
END_seq_aB_TOP2Bko_0_5h_rep1
GSM3714907
END_seq_aB_TOP2Bko_0_5h_rep2
GSM3714908
END_seq_aB_WT_0_5h_rep1
GSM3714909
END_seq_aB_WT_0_5h_rep2
GSM3714910
END_seq_MEF_NT (re-used)
GSM3714911
END_seq_aB12h_NT (re-used)
GSM3714930
ChIP_seq_CTCF_PB_LIG4
GSM3714931
ChIP_seq_RAD21_PB_LIG4
GSM3714932
ChIP_seq_RAD21_MEF_WT
GSM3714933
ChIP_seq_RAD21_MEF_SMC3
GSM3714934
ChIP_seq_RAD21_MEF_WAPL_FF
GSM3714935
ChIP_seq_RAD21_MEF_WAPL_FF_CRE
GSM3714936
ChIP_seq_TOP2B_MEF_WT
GSM3714937
ChIP_seq_TOP2B_MEF_SMC3
GSM3714938
ChIP_seq_TOP2B_MEF_WAPL_FF_CRE
GSM3714939
ChIP_seq_RAD21_HCT116
GSM3714940
ChIP_seq_CTCF_HCT116
GSM3714941
ChIP_seq_INPUT_HCT116
GSM3714942
nsRNA_seq_PB_NT
GSM3714943
nsRNA_seq_PB_DRB
GSM3714944
nsRNA_seq_PB_IFNB
GSM3714945
HTGTS_PB_ZFN_NT_NT_1_TOPO
GSM3714946
HTGTS_PB_ZFN_NT_NT_2_TOPO
GSM3714947
HTGTS_PB_ZFN_ETO_NT_1_TOPO
GSM3714948
HTGTS_PB_ZFN_ETO_NT_2_TOPO
GSM3714949
HTGTS_PB_ZFN_IFN_NT_TOPO
GSM3714950
HTGTS_PB_ZFN_IFN_ETO_TOPO
GSM3714951
HTGTS_PB_ZFN_DRB_NT_TOPO
GSM3714952
HTGTS_PB_ZFN_DRB_ETO_TOPO
GSM3714953
HTGTS_PB_ZFN_NT_ASISI
GSM3714954
HTGTS_PB_ZFN_DRB_ASISI
This SuperSeries is composed of the following SubSeries:
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GSE129524
Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity [END-seq]
GSE129526
Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity [ChIP-seq]
GSE129527
Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity [Nascent RNA]
GSE129528
Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity [HTGTS]
Relations
BioProject
PRJNA531661
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE129529_RAW.tar
9.2 Gb
(http)
(custom)
TAR (of BW, TXT)
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