NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE129560 Query DataSets for GSE129560
Status Public on May 30, 2019
Title Study to compare SET ER/PR index values from Affymetrix U133A microarrays to values from targeted RNASeq and to validate technical reproducibility on U133A microarrays
Organism Homo sapiens
Experiment type Expression profiling by array
Summary 63 samples were profiled in replicates on Affymetrix microarrays and using a custom RNASeq panel. The samples were randomly split in a training and validation cohort. SET ER/PR was calculated and a linear model was trained and validated to reproduce values obtained by microarray using RNASeq.
In addition, the microarray replicates were used to validate the technical reproducibility of SET ER/PR.
 
Overall design 63 tissue samples were taken of breast cancer patients without any prior systemic treatment. The samples were stored in RNA later for processing on both Affymetrix U133A microarrays and using a custom RNASeq panel.
 
Contributor(s) Sinn BV, Symmans WF
Citation(s) 31231679
Submission date Apr 09, 2019
Last update date Jun 29, 2019
Contact name Bruno Valentin Sinn
E-mail(s) bruno.sinn@charite.de
Organization name University of Texas - MD Anderson Cancer Center
Department Translational Molecular Pathology
Lab W.F. Symmans
Street address 2130 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (128)
GSM3716232 breast cancer sample, replicate 1 [Anon_11D_R1]
GSM3716233 breast cancer sample, replicate 2 [Anon_11D_R2]
GSM3716234 breast cancer sample, replicate 1 [Anon_11H_R1]
This SubSeries is part of SuperSeries:
GSE124648 SET ER/PR - A robust 18-gene Predictor for Sensitivity to Endocrine Therapy for Metastatic Breast Cancer
Relations
BioProject PRJNA531737

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129560_RAW.tar 263.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap