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Series GSE129979 Query DataSets for GSE129979
Status Public on Apr 22, 2020
Title Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine
Organisms Oryza sativa; Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary We applied chemical-assisted, m6A-SEAL method to profile m6A distributions in the transcriptomes of human and plant cells and compared its results against MeRIPm6A-seq.
 
Overall design Examination for RNA methylation states on different species by chemical assisted method (m6A-SEAL) and antibody-based method (MeRIP-seq), then analyzed and compared the performance of those two methods.
 
Contributor(s) Wang Y, Jia G
Citation(s) 32341502
Submission date Apr 17, 2019
Last update date Jul 22, 2020
Contact name Ye Wang
E-mail(s) wyeast886@gmail.com
Organization name UCLA
Department Bioinformatics
Lab Frank Alber Lab
Street address 611 Charles E Young Dr E
City Los Angeles
State/province California
ZIP/Postal code 90095
Country USA
 
Platforms (3)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL21087 Illumina NextSeq 500 (Oryza sativa)
GPL24468 HiSeq X Ten (Oryza sativa)
Samples (16)
GSM3728899 rice.1.m6A.seal.ip
GSM3728900 rice.1.m6A.seal.input
GSM3728901 rice.2.m6A.seal.ip
Relations
BioProject PRJNA533326
SRA SRP192884

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129979_RAW.tar 344.1 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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