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Series GSE130514 Query DataSets for GSE130514
Status Public on Aug 02, 2019
Title Lmx1b is required at multiple stages to build expansive serotonergic axon architectures
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Formation of long-range axons occurs over multiple stages of morphological maturation. However, the intrinsic transcriptional mechanisms that temporally control different stages of axon projection development are unknown. Here, we addressed this question by studying the formation of mouse serotonin (5-HT) axons, the exemplar of long-range profusely arborized axon architectures. We report that LIM homeodomain factor 1b (Lmx1b)-deficient 5-HT neurons fail to generate axonal projections to the forebrain and spinal cord. Stage-specific targeting demonstrates that Lmx1b is required at successive stages to control 5-HT axon primary outgrowth, selective routing, and terminal arborization. We show a Lmx1b→Pet1 regulatory cascade is temporally required for 5-HT arborization and upregulation of the 5-HT axon arborization gene, Protocadherin-alphac2, during postnatal development of forebrain 5-HT axons. Our findings identify a temporal regulatory mechanism in which a single continuously expressed transcription factor functions at successive stages to orchestrate the progressive development of long-range axon architectures enabling expansive neuromodulation.
 
Overall design 5-HT neuron RNA profiles of control (CON), Lmx1bCKO, and Pet1CKO (at E17.5 and P2 (Lmx1bCKO only at P2)) mice were generated by deep sequencing, in triplicate, using Illumina HiSeq 500/550. The sequence reads that passed quality filters were analyzed at the gene level with TopHat2 followed by Cufflinks.
 
Contributor(s) Donovan LJ, Spencer WC, Kitt M, Eastman B, Lobur KJ, Silver J, Jiao K, Deneris ES
Citation(s) 31355748
NIH grant(s)
Grant ID Grant title Affiliation Name
P50 MH096972 Early Brain Serotonin and Its Lasting Impact on Neuronal Epigenetic Programming CASE WESTERN RESERVE UNIVERSITY EVAN S DENERIS
R01 MH062723 genetic mechanisms controlling serotonergic function across life span CASE WESTERN RESERVE UNIVERSITY EVAN S DENERIS
Submission date Apr 30, 2019
Last update date Aug 02, 2019
Contact name Evan Deneris
E-mail(s) esd@case.edu
Organization name Case Western Reserve University
Department Neurosciences
Street address 2109 Adelbert Rd.
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (18)
GSM3741595 WT_ros_1
GSM3741596 WT_ros_2
GSM3741597 WT_ros_3
Relations
BioProject PRJNA540504
SRA SRP194283

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130514_Lmx1bCKO_caudal_E17.5.csv.gz 820.3 Kb (ftp)(http) CSV
GSE130514_Lmx1bCKO_rostral_E17.5.csv.gz 817.9 Kb (ftp)(http) CSV
GSE130514_Lmx1bCKO_rostral_P2.csv.gz 814.0 Kb (ftp)(http) CSV
GSE130514_Pet1CKO_ros_E17.5.csv.gz 800.5 Kb (ftp)(http) CSV
GSE130514_mycPet1_ChIP_peaks.mm10.qval0.01.bed.gz 110.1 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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