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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 19, 2020 |
| Title |
RNA-seq of triple knockout (TKO) mouse embryonic stem cells: Dnmt1-/-, Dnmt3a-/-, Dnmt3b-/-. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
TKO mouse embryonic stem cells were cultured in serum/LIF and 2i/LIF in order to investigate the role of methylation in the transcriptional regulation of ground state cells (Clone: TKO 121, Tsumura et.al. 2006).
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| Overall design |
RNA-Seq TKO_serum and TKO_2i, 3 biological replicates per condition
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| Contributor(s) |
Shukla R, Mjoseng HK, Thomson JP, Kling S, Sproul D, Dunican DS, Wongtawan T, Treindl F, Templin MF, Adams IR, Pennings S, Grimes GR, Meehan RR |
| Citation(s) |
32585002 |
| Submission date |
May 03, 2019 |
| Last update date |
Nov 16, 2020 |
| Contact name |
Heidi Katharina Mjoseng |
| E-mail(s) |
hmjoseng@gmail.com
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| Phone |
00441316518500
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| Organization name |
HGU, IGMM, The university of Edinburgh
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| Street address |
Crewe Road South
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| City |
Edinburgh |
| ZIP/Postal code |
EH4 2XU |
| Country |
United Kingdom |
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| Platforms (1) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA541006 |
| SRA |
SRP194961 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE130686_RAW.tar |
11.0 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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