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Series GSE131936 Query DataSets for GSE131936
Status Public on May 30, 2019
Title Relative timing of type I interferon response and virus replication determines disease outcome during MERS-CoV infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Type 1 interferons (IFN-I) generally protect mammalian hosts from virus infections, but in some cases, IFN-I is pathogenic. Because IFN-I is protective, it is commonly used to treat virus infections for which no specific approved drug or vaccine is available. The Middle East respiratory syndrome-coronavirus (MERS-CoV) is such an infection, yet little is known about the role of IFN-I in this setting. Here we show that IFN-I signaling is protective during MERS-CoV infection. Blocking IFN-I signaling resulted in delayed virus clearance, enhanced neutrophil infiltration and impaired MERS-CoV-specific T cell responses. Notably, IFN-I administration within 1-day post infection (before virus titers peak) protected mice from lethal infection, despite a decrease in ISG (interferon stimulated gene) and inflammatory cytokine gene expression. In contrast, delayed IFN-I treatment failed to effectively inhibit virus replication, increased infiltration and activation of monocyte-macrophages and neutrophils into the lungs and enhanced pro-inflammatory cytokine expression, resulting in fatal pneumonia in an otherwise sub-lethal infection. Together, these results suggest that the relative timing of the IFN-I response and maximal virus replication is key in determining outcomes, at least in infected mice. By extension, IFN-I or combination therapy may need to be used cautiously to treat virus infections in clinical settings.
 
Overall design Examination of gene expression in early and late IFN treated lungs after MERS-CoV infection.
 
Contributor(s) Perlman S, Channappanavar R
Citation(s) 31355779
Submission date May 29, 2019
Last update date Aug 29, 2019
Contact name Stanley Perlman
E-mail(s) stanley-perlman@uiowa.edu
Phone 3193358549
Organization name University of Iowa
Street address Dept. Microbiology, BSB 3-712, 51 Newton Road
City Iowa City
State/province Iowa
ZIP/Postal code 52242
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (16)
GSM3831224 MERS-CoV-infected-untreated-sacrifice-3dpi [1C1]
GSM3831225 MERS-CoV-infected-untreated-sacrifice-3dpi [1C2]
GSM3831226 MERS-CoV-infected-untreated-sacrifice-3dpi [1C3]
Relations
BioProject PRJNA545350
SRA SRP199796

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131936_Channappanavar_Raw_Data.txt.gz 507.1 Kb (ftp)(http) TXT
GSE131936_Processed_files_1C_vs._1T_314genes_2XFC_FDR_0.05.xlsx 3.7 Mb (ftp)(http) XLSX
GSE131936_Processed_files_2C_vs_2T_101genes_2XFC_FDR_0.05.xlsx 4.1 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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