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| Status |
Public on Jun 01, 2022 |
| Title |
Transcriptome analysis of Escherichia coli K-12 MG1655 under toxoflavin and troplone conditions |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA-seq based transcriptome analysis was employed to understand the genome-wide expression patterns under the phytotoxin treatment. To identify differentially expressed genes, we compared phytotoxins (toxoflavin and tropolone) transcriptome to methanol transcriptome as the solvent of phytotoxins. The expression of 2327 and 830 genes was differentially changed by toxoflavin and tropolone, respectively.
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| Overall design |
Nine libraries constructed: Each three replicates of toxoflavin, tropolone, methanol conditions in Escherichia coli K-12 MG1655
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| Contributor(s) |
Park J, Lee H, Jung H, Seo Y |
| Citation missing |
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| Submission date |
Jun 26, 2019 |
| Last update date |
Jun 01, 2022 |
| Contact name |
Jungwook Park |
| E-mail(s) |
jjuwoogi@pusan.ac.kr
|
| Organization name |
Pusan National University
|
| Department |
Microbiology
|
| Street address |
Pusan National University, 2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, Korea
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| City |
Busan |
| ZIP/Postal code |
ASI|KR|KS012|PUSAN |
| Country |
South Korea |
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| Platforms (1) |
| GPL14548 |
Illumina HiSeq 2000 (Escherichia coli) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA551225 |
| SRA |
SRP212116 |
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