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Series GSE133787 Query DataSets for GSE133787
Status Public on Jul 04, 2019
Title Genome-wide alteration of 5-hydroxymethylcytosine in hypoxic-ischemic neonatal rat model of cerebral palsy
Organism Rattus norvegicus
Experiment type Methylation profiling by high throughput sequencing
Summary Our results revealed that hypoxic-ischemic brain injury decreased the overall 5hmC abundance in rat temporal cortex, and these results suggest that 5hmC modifications are involved in the cerebral palsy pathogenesis.
 
Overall design Examination of DNA hydroxymethylation modifications in temporal lobe cortex of control rats and hypoxic-ischemic rats.
 
Contributor(s) Li B, Zhang Y
Citation(s) 31551709
Submission date Jul 03, 2019
Last update date Oct 01, 2019
Contact name Yunpeng Zhang
E-mail(s) zhangyunpeng2019@163.com
Phone +8618116335939
Organization name Fudan university
Department jinshan hospital
Street address Longhang Road 1508 Jinshan distinct
City Shanghai
ZIP/Postal code 201500
Country China
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (6)
GSM3927328 Temporal lobe cortex, Control hMeDIP 1
GSM3927329 Temporal lobe cortex, Control hMeDIP 2
GSM3927330 Temporal lobe cortex, Control hMeDIP 3
Relations
BioProject PRJNA552546
SRA SRP212916

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133787_RAW.tar 3.4 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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