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Series GSE134479 Query DataSets for GSE134479
Status Public on Feb 05, 2020
Title Lgr5+ telocytes are a signaling hub at the intestinal villus tip
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We molecularly characterized thousands of intestinal cells including epithelial, masenchymal and immune cells using scRNAseq. This enable us to uncover the important role of villus tip telocytes as master regulators of the epithelial spatial expression programs along the villus axis
 
Overall design mRNA profiles from single cells, EDTA isolated jejunum epithelial cells and LCM samples extracted from mouse jejunum were sequenced in several batches in an Illumina NextSeq.
 
Contributor(s) Halpern KB, Massalha H, Moor A, Zwick R, Azofeifa DC, Rozenberg M, Farack L, Egozi A, Miller D, Averbukh I, Harnik Y, Corem NW, de Sauvage FJ, Amit I, Klein O, Carmel MS, Itzkovitz S
Citation(s) 32321913, 34031373
Submission date Jul 18, 2019
Last update date Jun 15, 2021
Contact name Keren Bahar-Halpern
Organization name Weizmann Institute
Lab Itzkovitz
Street address Herzl St 234
City Rehovot
ZIP/Postal code 7610001
Country Israel
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (73)
GSM3950612 mouse 1 villus bottom - rep 1
GSM3950613 mouse 1 villus bottom - rep 2
GSM3950614 mouse 1 crypt - rep 1
Relations
BioProject PRJNA555252
SRA SRP215221

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134479_DT_Bulk_umitab.txt.gz 217.3 Kb (ftp)(http) TXT
GSE134479_LCM_tpm_gene.txt.gz 2.4 Mb (ftp)(http) TXT
GSE134479_Telocytes_sc_umitab.txt.gz 5.5 Mb (ftp)(http) TXT
GSE134479_marsseq_cell_barcodes.txt.gz 1.1 Kb (ftp)(http) TXT
GSE134479_mcSCRBseq_samples_barcodes.txt.gz 205 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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