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Series GSE135463 Query DataSets for GSE135463
Status Public on Aug 07, 2019
Title Transcriptomic changes induced by Gsk-3-deletion in cerebellar progenitors
Organism Mus musculus
Experiment type Expression profiling by array
Summary Cerebellar development requires regulated proliferation of cerebellar granule neuron progenitors (CGNPs). Inadequate CGNP proliferation causes cerebellar hypoplasia while excessive CGNP proliferation can cause medulloblastoma, the most common malignant pediatric brain tumor. Although Sonic Hedgehog (SHH) signaling is known to activate CGNP proliferation, the mechanisms down-regulating proliferation are less defined. We investigated CGNP regulation by GSK-3, which down-regulates proliferation in the forebrain, gut and breast by suppressing mitogenic WNT signaling. In striking contrast, we found that co-deleting Gsk-3α and Gsk-3β blocked CGNP proliferation, causing severe cerebellar hypoplasia. Transcriptomic analysis showed activated WNT signaling and up-regulated Cdkn1a in Gsk-3-deleted CGNPs. These data show that a GSK-3/WNT axis modulates the developmental proliferation of CGNPs and the pathologic growth of SHH-driven medulloblastoma. The requirement for GSK-3 in SHH-driven proliferation suggests that GSK-3 may be targeted for SHH-driven medulloblastoma therapy.
In this experiment, we dissociated cells from whole cerebella collected from postnatal day 1 (P1) mice with the indicated genotypes.
 
Overall design Whole cerebella were collected from P1 mice with both isoforms of Gsk-3 deleted, Gsk-3b deleted, or Gsk-3 intact. Cells were dissociated and CGNPs were enriched through a density gradient before isolating RNA. 5 replicates of each indicated genotype were included in the study. Gsk-3-deleted samples (Gsk-3 DKO) were compared to either Cre-containing Math1-Cre/GSKa+/- controls or controls with no Cre and Gsk-3 intact.
 
Contributor(s) Ocasio JK, Gershon TR
Citation(s) 31540917
Submission date Aug 06, 2019
Last update date Nov 11, 2019
Contact name Jennifer Karín Ocasio
E-mail(s) ocasio@email.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Neurology
Lab Gershon lab
Street address 115 Mason Farm Rd NRB 6131
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Platforms (1)
GPL17400 [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [transcript (gene) version]
Samples (15)
GSM4010715 Cerebella_GSK-3DKO_1
GSM4010716 Cerebella_GSK-3DKO_2
GSM4010717 Cerebella_GSK-3DKO_3
Relations
BioProject PRJNA558975

Download family Format
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MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135463_RAW.tar 68.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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