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| Status |
Public on Apr 17, 2020 |
| Title |
Transcriptome analysis of CA1 rat hippocampus 1 week after kainate seizure at P7 |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Seizures that occur during early development are associated with adverse neurodevelopmental outcomes. Causation and mechanisms are currently under investigation. Induction of an early life seizure by kainic acid (KA) in immature rats on post-natal day (P) 7 results in behavioral changes in the adult rat that reflect social and intellectual deficits without overt cellular damage. Our previous work also demonstrated increased expression of CA1 hippocampal long-term potentiation (LTP) and reduced desensitization of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid-type ionotropic glutamate receptors (AMPA-R) one week following a kainic acid induced seizure (KA-ELS). Here we used RNA sequencing (RNAseq) of mRNA from dorsal hippocampal CA1 to probe changes in mRNA levels one week following KA-ELS as a means to investigate the mechanisms for these functional changes. Ingenuity pathway analysis (IPA) confirmed our previous results by predicting an up-regulation of the synaptic LTP pathway. Differential gene expression results revealed significant differences in 7 gene isoforms. Additional assessments included AMPA-R splice variants and adenosine deaminase acting on RNA 2 (ADAR2) editing sites as a means to determine the mechanism for reduced AMPA-R desensitization. Splice variant analysis demonstrated that KA-ELS result in a small, but significant decrease in the "flop" isoform of Gria3, and editing site analysis revealed significant changes in the editing of a kainate receptor subunit, Grik2, and a serotonin receptor, Htr2c. While these specific changes may not account for altered AMPA-R desensitization, the differences indicate that KA-ELS alters gene expression in the hippocampal CA1 one week after the insult.
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| Overall design |
8 ka-els, 8 control, no replicates
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| Contributor(s) |
O'Leary H, Saba LM, Benke TA |
| Citation(s) |
32062370 |
| Submission date |
Sep 05, 2019 |
| Last update date |
Apr 17, 2020 |
| Contact name |
Tim Benke |
| E-mail(s) |
Tim.Benke@cuanschutz.edu
|
| Organization name |
University of Colorado School of Medicine
|
| Department |
Pediatrics
|
| Street address |
12800 E 19th MS 8102
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
| GPL22396 |
Illumina HiSeq 4000 (Rattus norvegicus) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA564028 |
| SRA |
SRP220438 |
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